Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
CRISPRseek
•
reset
6
votes
12
replies
1.7k
views
CRISPRseek ERROR, can't read featureWeightMatrix in, wrong data format
CRISPRseek
software error
4.4 years ago
nils.hassel
• 0
6
votes
14
replies
1.9k
views
gRNAefficacy calculations in CRISPRseek
crisprseek
crispr
gRNAefficacy
grna
updated 3.6 years ago by
Julie Zhu
★ 4.3k • written 3.6 years ago by
Dawid G. Nowak
▴ 40
5
votes
11
replies
1.4k
views
CRISPRseek Unusual Error
crisprseek
updated 5.1 years ago by
Julie Zhu
★ 4.3k • written 5.1 years ago by
Dawid G. Nowak
▴ 40
5
votes
24
replies
3.3k
views
CRISPRseek scoring clarification
crisprseek
updated 6.4 years ago by
Julie Zhu
★ 4.3k • written 7.1 years ago by
elspeth.ransom
• 0
4
votes
12
replies
1.6k
views
CFDscore calculations used in CRISPRseek
crisprseek
CFDscore
updated 5.8 years ago by
Julie Zhu
★ 4.3k • written 5.8 years ago by
Dawid G. Nowak
▴ 40
4
votes
1
reply
752
views
CRISPRSeek Results files column interpretation
CRISPRseek
updated 3.4 years ago by
Julie Zhu
★ 4.3k • written 3.4 years ago by
xenon
▴ 40
4
votes
3
replies
831
views
Improving the run-time of offTargetAnalysis()
CRISPRseek
updated 2.9 years ago by
Daniel
• 0 • written 3.4 years ago by
xenon
▴ 40
3
votes
2
replies
1.2k
views
CRISPRseek with (rough) Draft Genome
crisprseek
grna searching
bsgenome forge
offtarget analysis
updated 7.8 years ago by
Hervé Pagès
16k • written 7.8 years ago by
rajewski23
• 0
3
votes
10
replies
1.4k
views
CRISPRseek OffTargetAnalysis Warning: Error in Hash and NAs introduced by coercion
CRISPRseek
Error in hash
NAs introduced by coercion
updated 3.8 years ago by
Julie Zhu
★ 4.3k • written 3.8 years ago by
nils.hassel
• 0
2
votes
7
replies
2.6k
views
CRISPRseek Error in .Call2("solve_user_SEW0", start, end, width, PACKAGE = "IRanges") interpretation
CRISPRseek
3.3 years ago • updated 3.2 years ago
xenon
▴ 40
2
votes
3
replies
1.7k
views
offTargetAnalysis() Error in weights %*% mismatch.pos : non-conformable arguments (CRISPRSeek)
CRISPRseek
updated 6.6 years ago by
Julie Zhu
★ 4.3k • written 6.6 years ago by
robert_w_link
• 0
2
votes
3
replies
1.1k
views
offTargetAnalysis takes super long
CRISPRseek
updated 8.5 years ago by
Julie Zhu
★ 4.3k • written 8.5 years ago by
Dawid G. Nowak
▴ 40
2
votes
27
replies
3.9k
views
CRISPRseek package: be aware that as of Oct 2015, CRISPRseek works best for for regions < 200kb
crisprseek
sgrna
crispr
cas9
R
8.5 years ago • updated 8.4 years ago
alexgraehl
▴ 20
1
vote
2
replies
867
views
CRISPRseek package: offTargetAnalysis() error with mouse genome
CRISPRseek
2.3 years ago
nderian
▴ 10
1
vote
2
replies
932
views
How to understand Summary.xls in output of CRISPRseek
crisprseek
updated 5.8 years ago by
Julie Zhu
★ 4.3k • written 5.8 years ago by
Ou, Jianhong
★ 1.3k
1
vote
2
replies
882
views
A unexpected error occurred when using CRISPRseek package
crisprseek
updated 5.8 years ago by
Julie Zhu
★ 4.3k • written 5.8 years ago by
prokaryote23
• 0
1
vote
1
reply
1.4k
views
News:
CRISPRseek: generate gRNAs in bed format, useScore argument
CRISPRseek
News
updated 9.4 years ago by
orkanilbay
• 0 • written 9.4 years ago by
Julie Zhu
★ 4.3k
1
vote
1
reply
729
views
CRISPRSeek module output - summary file: topN.offtargettotalscore
CRISPRSeek
updated 5.1 years ago by
Julie Zhu
★ 4.3k • written 5.1 years ago by
Nan
• 0
1
vote
0
replies
1.1k
views
CRISPRseek orgAnn argument
crisprseek
9.5 years ago
Julie Zhu
★ 4.3k
1
vote
8
replies
1.7k
views
CRISPRseek with genome not available in BSgenome
bsgenome
crisprseek
updated 6.7 years ago by
Julie Zhu
★ 4.3k • written 7.0 years ago by
millepattes.intersites
• 0
1
vote
1
reply
644
views
Using a DNAStringSet of guideRNA+PAM sequences in offTargetAnalysis()
CRISPRseek
updated 3.4 years ago by
Julie Zhu
★ 4.3k • written 3.4 years ago by
xenon
▴ 40
1
vote
1
reply
1.3k
views
CRISPRseek R package: description of output fields that are unclear
crisprseek
R
CRISPR
sgRNA
updated 8.2 years ago by
Julie Zhu
★ 4.3k • written 8.2 years ago by
alexgraehl
▴ 20
1
vote
2
replies
1.1k
views
CRISPRseek searching requirement
CRISPRSEEK
updated 8.1 years ago by
Julie Zhu
★ 4.3k • written 8.1 years ago by
Daniel
• 0
1
vote
9
replies
2.2k
views
CRISPRseek for Arabidopsis
crisprseek
arabidopsis thaliana
updated 9.3 years ago by
Julie Zhu
★ 4.3k • written 9.4 years ago by
jeremyatwsu
• 0
0
votes
0
replies
1.1k
views
Off Target region
offtarget analysis
crisprseek
6.6 years ago
susobhanbaidya
• 0
0
votes
0
replies
810
views
Interpretation of Score vs gRNA efficacy
crisprseek
6.5 years ago
robert_w_link
• 0
0
votes
1
reply
921
views
CFD scores for searchHits?
crisprseek
updated 6.4 years ago by
Julie Zhu
★ 4.3k • written 6.4 years ago by
joyce
• 0
0
votes
1
reply
1.3k
views
could not find function "hash"
crisprseek
updated 6.4 years ago by
Julie Zhu
★ 4.3k • written 6.4 years ago by
joyce
• 0
0
votes
6
replies
1.7k
views
CRISPRseek CFD score
crisprseek
updated 6.4 years ago by
Julie Zhu
★ 4.3k • written 6.4 years ago by
joyce
• 0
0
votes
2
replies
912
views
Does CRISPRSEEK work on previously unknown genomes?
crisprseek
unknown genome
updated 6.4 years ago by
Julie Zhu
★ 4.3k • written 6.4 years ago by
yhuang2
• 0
0
votes
1
reply
1.2k
views
CRISPRseek gRNA efficacy
crisprseek
updated 6.4 years ago by
Julie Zhu
★ 4.3k • written 6.4 years ago by
joyce
• 0
0
votes
0
replies
1.4k
views
replacement has X rows, data has Y rows
crisprseek
6.2 years ago
robert_w_link
• 0
0
votes
5
replies
1.4k
views
CRISPRseek offTargetAnalysis errors
CRISPRseek
6.2 years ago
joyce
• 0
0
votes
1
reply
892
views
CRISPRseek: offTargetAnalysis -> buildFeatureVectorForScoring increase max.mismatch error
crisprseek
offtargetanalysis
updated 5.7 years ago by
Julie Zhu
★ 4.3k • written 5.7 years ago by
jacob.bradford
• 0
0
votes
2
replies
1.3k
views
Problem installing CRISPRseek
crisprseek
updated 5.5 years ago by
Julie Zhu
★ 4.3k • written 5.5 years ago by
ldumas9
• 0
0
votes
4
replies
986
views
CRISPRseek:::findgRNAs paired gRNAs with PAM inward orientation
CRISPRseek
paired gRNA
updated 4.8 years ago by
Julie Zhu
★ 4.3k • written 4.8 years ago by
saba.parvez
• 0
0
votes
1
reply
781
views
CRISPRseek - adding CRISPRscan score
CRISPRseek
updated 4.4 years ago by
Julie Zhu
★ 4.3k • written 4.4 years ago by
ptgriffin
• 0
0
votes
5
replies
1.1k
views
CRISPRseek help to generate gRNAs for CRISPRi library
CRISPRseek
updated 4.3 years ago by
Julie Zhu
★ 4.3k • written 4.3 years ago by
Lucka387
• 0
0
votes
2
replies
715
views
gRNA design for prime editing using CRISPRseek
CRISPRseek
pegRNA
prime editing gRNA
updated 3.9 years ago by
Julie Zhu
★ 4.3k • written 3.9 years ago by
giti_gazisoltani
• 0
0
votes
1
reply
606
views
CRISPRseek base editor
CRISPRseek
updated 3.5 years ago by
Julie Zhu
★ 4.3k • written 3.5 years ago by
s.islambey
• 0
0
votes
5
replies
2.9k
views
Error in data.frame(..., check.names = FALSE) : arguments imply differing number of rows
CRISPRseek
2.3 years ago • updated 2.2 years ago
Miguel
• 0
0
votes
2
replies
749
views
CRISPRseek package: findgRNAs error
CRISPRseek
2.4 years ago
nderian
▴ 10
0
votes
2
replies
735
views
CRISPRseek package: 5’ PAM?
CRISPRseek
3.0 years ago
nderian
▴ 10
0
votes
1
reply
533
views
extendedSequences length is not the required for DeepCpf1 (34bp)
CRISPRseek
21 months ago
Miguel
• 0
0
votes
1
reply
977
views
CRISPRseek offTargetAnalysis error
crisprseek
updated 6.3 years ago by
Julie Zhu
★ 4.3k • written 6.3 years ago by
joyce
• 0
0
votes
2
replies
1.7k
views
TxDb file for Drerio (ie zebrafish)
Organism
zebrafish
CRISPRseek
Organism
zebrafish
CRISPRseek
updated 10.1 years ago by
James W. MacDonald
65k • written 10.1 years ago by
Brodsky, Michael
▴ 10
0
votes
0
replies
1.1k
views
CRISPRseek: searchHits() optimization
Preprocessing
BSgenome
safe
BSgenome
CRISPRseek
Preprocessing
BSgenome
safe
BSgenome
9.7 years ago
Julie Zhu
★ 4.3k
0
votes
2
replies
2.3k
views
CRISPRseek question on scoring
CRISPRseek
9.6 years ago • updated 5.1 years ago
Julie Zhu
★ 4.3k
0
votes
8
replies
1.9k
views
CRISPRseek: annotate gene
CRISPRseek
9.4 years ago • updated 8.8 years ago
Julie Zhu
★ 4.3k
0
votes
2
replies
1.8k
views
CRISPRseek: alternative PAM sequence from NmCas9
CRISPRseek
gRNA searching
offtarget analysis
NmCas9
8.8 years ago
Julie Zhu
★ 4.3k
50 results • Page
1 of 1
Recent ...
Replies
Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Awards
• All
Popular Question
to
michael.s
• 0
Popular Question
to
James W. MacDonald
65k
Popular Question
to
Pierre Lindenbaum
▴ 10
Popular Question
to
Gordon Smyth
50k
Popular Question
to
Jenny Drnevich
★ 2.0k
Locations
• All
United States,
56 minutes ago
United States,
1 hour ago
Ghana/KNUST,
1 hour ago
Mexico,
2 hours ago
Canada,
3 hours ago
Traffic: 443 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6