Showing : Cancer • reset
2
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3
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DESeq2: DE Analysis with very imbalanced samples per condition
deseq2 cancer
updated 3 months ago by • 0 • written 4.4 years ago by • 0
0
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3
replies
2.5k
views
Background correction with neqc
Normalization Cancer Normalization Cancer
updated 5 months ago by 50k • written 12.4 years ago by ★ 13k
0
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1
reply
11k
views
heatmap.2 - change column & row locations; angle / rotate
Cancer Cancer
written 10.4 years ago by ▴ 10
0
votes
1
reply
530
views
BioC packages in cancer genomics
genomics cancer
updated 13 months ago by ★ 3.9k • written 14 months ago by ▴ 670
0
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0
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567
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Job: Postdoctoral Fellow – Computational Biology (Genetic Interactions in Cancer)
geneticinteractions cancer networks machine_learning
13 months ago Colm • 0
1
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6
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2.1k
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TCGA: clinical data and expression data
microarray annotation cancer
updated 14 months ago by • 0 • written 3.6 years ago by • 0
0
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0
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694
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Job: PhD Positions in Computational Research, Data Science and Artificial Intelligence at the German Cancer Research Center (DKFZ)
cancer bioinformatics proteomics genomics phd
17 months ago DKFZ International PhD Program ▴ 10
1
vote
0
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746
views
Job: Research Fellow in Prostate Cancer Proteomics (Bioinformatics/Stats/Data Analysis) - University of St Andrews
Multiomics Proteomics Cancer Statistics Bioinformatics
21 months ago Andy Lynch ▴ 120
0
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0
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729
views
Calculating tumour purity having only CNA data
PureCN CNA purity cancer
22 months ago JAcky • 0
0
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3
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4.8k
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how to get gene list for given GO terms?
Pathways GO Cancer PROcess goTools genomes Pathways GO Cancer PROcess goTools genomes
updated 22 months ago by • 0 • written 12.2 years ago by ★ 7.2k
0
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0
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733
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Job: Postdoc position - Genetic epi/statistical genetics
GWAS cancer biomarkers PRS
22 months ago Sarah • 0
0
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1
reply
1.2k
views
An ESR essay about software design, and how it applies to Bioconductor
GUI Cancer GUI Cancer
written 20.2 years ago by ▴ 810
1
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0
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729
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Job: PhD Positions in Computational Research, Data Science and Artificial Intelligence at the German Cancer Research Center (DKFZ)
phd cancer genomics proteomics bioinformatics
2.0 years ago DKFZ International PhD Program ▴ 10
0
votes
1
reply
705
views
WGCNA
Cancer
updated 2.4 years ago by ▴ 780 • written 2.4 years ago by • 0
0
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0
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828
views
Job: Computational Biology Lab Head, Brain Cancer Centre, Melbourne, Australia
australia cancer wehi
3.0 years ago • updated 2.6 years ago Gordon Smyth 50k
0
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0
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844
views
Job: Cancer Bioinformatician @ University of East Anglia - Norwich Medical School, UK
cancer postdoc biomarkers Biobase
3.1 years ago Daniel Brewer ▴ 100
0
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0
replies
898
views
Job: Senior Research Associate in Bioinformatics @ University of East Anglia - Norwich Medical School, UK
Biobase bioinformatics biomarkers cancer
3.4 years ago Daniel Brewer ▴ 100
0
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0
replies
935
views
Job: Postdoctoral Data Scientist @ Oxford University, UK
Cancer CancerSubtypes postdoc
3.5 years ago Daniel Brewer ▴ 100
2
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13
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1.3k
views
Sample size imbalance in a multi-regional experiment
deseq2 cancer
updated 3.6 years ago by 41k • written 3.6 years ago by • 0
4
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7
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1.5k
views
Limma sample groups
microarray limma affy cancer
updated 3.6 years ago by 50k • written 3.6 years ago by • 0
0
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5
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2.0k
views
TCGA: to extract clinical data from barcode
cancer TCGAbiolinks
updated 3.6 years ago by ★ 3.9k • written 3.6 years ago by ▴ 10
0
votes
5
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1.9k
views
Differential expression analysis of multiple RNA-seq datasets using DESeq2
deseq2 cancer
updated 3.6 years ago by 41k • written 3.6 years ago by • 0
0
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0
replies
810
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Job: Senior Postdoc/Bioinformatician Research Fellow @ UEA, Norwich, UK - New deadline
cancer nextgenerationsequencing prostate Job
4.2 years ago • updated 3.8 years ago Daniel Brewer ▴ 100
4
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10
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2.5k
views
how to analyze WGCNA results?
cancer probe deseq2 annotation normalization
updated 3.9 years ago by ★ 3.9k • written 3.9 years ago by ▴ 10
1
vote
2
replies
3.8k
views
Partial NA coefficients for 10 probe(s) Limma
limma microarray cancer
updated 4.0 years ago by ★ 3.9k • written 4.1 years ago by • 0
0
votes
3
replies
1.3k
views
Topgo, Deseq and KEGG pathway
annotation cancer
updated 4.0 years ago by 3.8k • written 4.0 years ago by • 0
0
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1
reply
988
views
WGCNA analysis on RNAseq and proteoimcs data
cancer
updated 4.1 years ago by ★ 3.0k • written 4.1 years ago by • 0
0
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0
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974
views
Job: Computational Biology & Bioinformatics Postdoctoral Research Associate / Research Assistant (Fixed Term) in (Epi)Genomic Regulation of Cancer @ Unive…
cancer computational biology bioinformatics epigenetics Job
4.2 years ago Shamith.Samarajiwa ▴ 180
0
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0
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857
views
Job: Data Sciences Statistician - Dana-Farber Cancer Institute
job data science biostatistics bioinformatics cancer Job
4.2 years ago Patrick Kimes ▴ 10
0
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0
replies
934
views
Job: postdoc position in computational cancer biology in Milan, Italy
cancer networks genomics epigenomics Job
4.4 years ago • updated 4.3 years ago marschaefer • 0
0
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0
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667
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Methylmix results are a bit different from beta values results
cancer methylmix methylation betavalues DMvalues
4.3 years ago luciomora8 • 0
0
votes
0
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830
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Job: Part-time postdoc in Bioinformatics (0.5 FTE) @ UEA, Norwich, UK
cancer biomarkers bioinformatician Job
4.4 years ago Daniel Brewer ▴ 100
0
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0
replies
561
views
miRNA and drugs
cancer
4.4 years ago maria.k.pagoni • 0
1
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0
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1.0k
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Job: PhD Studentship in Computational Biology and Machine Learning @ University of Cambridge (application deadline November 15th 2019)
cancer genomics deep learning computational biology Job
4.6 years ago • updated 4.5 years ago Shamith.Samarajiwa ▴ 180
1
vote
0
replies
977
views
Job: Research Assistant/Research Associate in Machine Learning and Computational Biology (fixed-term - closing date is Sunday 20th October 2019) @ Univers…
deep-learning cancer immunotherapy computational biology Job
4.6 years ago • updated 4.5 years ago Shamith.Samarajiwa ▴ 180
0
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0
replies
856
views
Job: Bolzano, Italy: Post Doc Researcher in bioinformatics of cancer epigenomics
cancer Job
4.5 years ago Johannes Rainer ★ 2.0k
1
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4
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1.2k
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Identify recurrent isoform switches using IsoformSwitchAnalyzeR in multiple rectal tumor samples
cancer Isoform limma IsoformSwitchAnalyzeR
updated 4.5 years ago by ▴ 120 • written 4.5 years ago by • 0
2
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1
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2.3k
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How to perform a differential expression analysis from TCGA file EBPlusPlusAdjustPANCAN_IlluminaHiSeq_RNASeqV2.geneExp.tsv
cancer limma deseq2
updated 4.6 years ago by ▴ 830 • written 4.6 years ago by ▴ 20
0
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0
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756
views
Job: Bioinformatician @ University of Cambridge
cancer bioinformatics R Job
4.6 years ago Shamith.Samarajiwa ▴ 180
0
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0
replies
902
views
Output GenVisR mutation frequency data by gene name instead of by sample name
GenVisR mutation frequency R cancer bioconductor
4.6 years ago sheneicechang • 0
0
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0
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681
views
News: Bay area Biotech-Pharma Statistics Workshop, with free R user meetup (Nov 6-8)
cancer meetup News
4.6 years ago Ning Leng • 0
0
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5
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1.8k
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RNA-seq time course analysis with only one experimental condition
deseq2 cancer rna-seq time-series
4.8 years ago mah19 • 0
0
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0
replies
807
views
MatchGenes in Bumphunter - result list with multiple genes
cancer
4.8 years ago hanna_engqvist • 0
1
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0
replies
1.5k
views
Job: Research Assistant position (Fixed Term -12 months initially - application deadline 9th June) in Machine Learning & Computational Cancer Genomics @ …
cancer deep learning genomics Job
5.0 years ago • updated 4.9 years ago Shamith.Samarajiwa ▴ 180
0
votes
0
replies
841
views
Job: Post-doctoral Fellow - Aparicio Lab @ BC Cancer Research Center, Vancouver BC Canada
single cell genome cancer Job
4.9 years ago jmaanaki • 0
0
votes
2
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882
views
Chromosomal location mapping for miRNAs
cancer
updated 4.9 years ago by 65k • written 4.9 years ago by ▴ 10
0
votes
3
replies
959
views
Is Background Correction necessary before DESeq analysis
deseq2 cancer
updated 4.9 years ago by 41k • written 4.9 years ago by • 0
1
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4
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961
views
DESeq2:Why is there an oblique line in my MA picture, which happened before, what caused this?
deseq2 cancer
updated 4.9 years ago by 41k • written 4.9 years ago by • 0
4
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1
reply
8.5k
views
WGCNA-unable to install GO.db package
go cancer
updated 5.0 years ago by 25k • written 5.0 years ago by ▴ 20
0
votes
1
reply
736
views
Help installing netReg
netReg cancer
5.0 years ago sbrackett007 • 0
50 results • Page 1 of 1
Recent ...
Replies
Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR) by Michael Love 41k
> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …
Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10
With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Answer: Opposite sign of LFC in count plots of DEGs (DESeq2) by swbarnes2 ★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error by James W. MacDonald 65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Votes
Answer: How to retrieve gene ontology GO class from gene list?
Answer: How to retrieve gene ontology GO class from gene list?
C: when to apply quantile normalization with voom in limma/voom framework with RNA-
A: How to know if I should use voomWithQualityWeights() or not?
A: Weird results (ribosomal proteins / Y-linked genes) in limma/voom
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