Bioconductor CancerData

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TCGAbiolinks RNASeq CancerData

updated 15 months ago by Tiago C. Silva ▴ 270 • written 17 months ago by JAcky • 0

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GEOquery CancerData limma RCy3 CancerInSilico

updated 2.0 years ago by Steve Lianoglou 13k • written 2.1 years ago by Caitlin ▴ 50

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Microarray GEOquery cancerdata MicroarrayData

updated 2.2 years ago by James W. MacDonald 64k • written 2.2 years ago by Caitlin ▴ 50

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CancerData StructuralGenomics VirusStability pH-dependence

2.3 years ago jim.warwicker • 0

4 results • Page 1 of 1

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Comment: DESeq2 - groups with biological replicates from the same patient by Oscar • 0

Thanks James for your helpful response. This particular experimental set up is very common in iPSC studies, where multiple differentiations…

Comment: DESeq2 test for synergistic vs additive effects by Jay • 0

Why is TrtAB - TrtA - TrtB + Control "not really a thing"? i came to this forum answer when attempting to use EdgeR to answer a similar que…

Comment: NCBI protein conversion to CDNA and NCBI gene (in R) by Gordon Smyth 48k

Continuation of https://support.bioconductor.org/p/9155428/

Comment: Why is DMRcate not available for Bioconductor version 3.18? by Tim Peters ▴ 150

Thanks Daniel, Gordon and Lori for flagging this. DSS is only needed for the vignette so I'll remove that section, plus the dependency, som…

Comment: NCBI protein to NCBI cDNA (Ensembl conversions would be great as well) in R by R_Page • 0

Thank you, this works well. As for CDNA, I figured out what I need to find, and have made a new post regarding it.

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Answer: Confused about the CPM and TMM normalization in edgeR

Answer: Differential gene expression analysis

Comment: Why is DMRcate not available for Bioconductor version 3.18?

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