Bioconductor CancerData

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TCGAbiolinks RNASeq CancerData

updated 15 months ago by Tiago C. Silva ▴ 270 • written 17 months ago by JAcky • 0

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GEOquery CancerData limma RCy3 CancerInSilico

updated 2.0 years ago by Steve Lianoglou 13k • written 2.0 years ago by Caitlin ▴ 50

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Microarray GEOquery cancerdata MicroarrayData

updated 2.2 years ago by James W. MacDonald 64k • written 2.2 years ago by Caitlin ▴ 50

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CancerData StructuralGenomics VirusStability pH-dependence

2.3 years ago jim.warwicker • 0

4 results • Page 1 of 1

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Comment: GOslim missing GO term by amanda • 0

Thank you for the advice and many thanks! It is WGCNA analysis. I will try your method today and see if there are some consistencies.

Comment: GOslim missing GO term by James W. MacDonald 64k

Is this a WGCNA analysis (multiple co-expression clusters sounds like WGCNA)? If so, none of that is inferential or easily interpreted. It …

Comment: GOslim missing GO term by amanda • 0

For each group, I generated multiple co-expression clusters, and within each cluster, cluster PC1 was correlated with PC1 of multiple clini…

Comment: GOslim missing GO term by James W. MacDonald 64k

What do you mean by 'enriched with ... GO terms from their correlations with clinical traits'? Are you doing a GO hypergeometric or somethi…

Comment: GOslim missing GO term by amanda • 0

I have multiple groups to compare with, and each enriched with hundreds of GO terms from their correlations with clinical traits (top1 pval…

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Comment: Why is DMRcate not available for Bioconductor version 3.18?

Comment: limma::voom vs edgeR::voomLmFit - when to use?

Answer: limma::voom vs edgeR::voomLmFit - when to use?

Awards • All

Scholar to James W. MacDonald 64k

Scholar to Assa Yeroslaviz ★ 1.5k