Biostar CancerData

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Microarray GEOquery cancerdata MicroarrayData

updated 8 months ago by James W. MacDonald 60k • written 8 months ago by Caitlin ▴ 50

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GEOquery CancerData limma RCy3 CancerInSilico

updated 6 months ago by Steve Lianoglou 13k • written 6 months ago by Caitlin ▴ 50

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CancerData StructuralGenomics VirusStability pH-dependence

9 months ago jim.warwicker • 0

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Comment: Italicise by Kevin Blighe 3.5k

Okay, I am guessing that the problem is that you need to update the version of *EnhancedVolcano* to the latest version. Can you try that? T…

Comment: Italicise by Pau • 0

They're the same: example of the vignette: "italic('VCAM1')" and result from my data: "italic('CARS1')" As I am running against time be…

Comment: Can Differential Isoform expression analysis can be performed using DESeq2 packa by priyanka.m • 0

Thank you for the suggestions. I will try to compare my results and accordingly interpret the two.

Answer: [sva] Error in density.default(x, adjust = adj) : 'x' contains missing values by wahaha • 0

I found the reason, because some gene expression levels are 0 in all samples. you can add these code to check the data: >exp_mean <- appl…

Answer: DESeq2 how to specify contrast to test difference of differences by Nicole • 0

The comment from @mikelove about specifying numeric contrasts answered my question. This code is not standalone, but I will leave it here i…

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Scholar to Nicole • 0

Teacher to Michael Love 37k