Showing : ChAMP • reset
3
votes
4
replies
8.5k
views
Problem loading R packages on MacBook Pro
newpackage ChAMP
updated 19 months ago by • 0 • written 2.4 years ago by • 0
0
votes
3
replies
7.6k
views
Downgrading R to an older version
MEDIPS ChAMP MEDIPS ChAMP
updated 9.7 years ago by ★ 8.2k • written 9.7 years ago by ▴ 70
0
votes
11
replies
6.2k
views
ChAMP input: Beta Matrix?
champ dmr analysis
updated 3.3 years ago by • 0 • written 8.1 years ago by • 0
6
votes
2
replies
5.6k
views
What is logFC and "B" in methylation analysis ??
limma champ logfc
updated 8.2 years ago by ★ 28k • written 8.2 years ago by ▴ 60
3
votes
7
replies
5.4k
views
error with champ.load
champ
written 6.5 years ago by ▴ 10
3
votes
9
replies
3.7k
views
champ.runCombat is failing: "invalid 'row.names' length"
champ
5.7 years ago Gurkenkönig ▴ 10
0
votes
6
replies
3.3k
views
Merge problems in R
methylationArrayAnalysis ChAMP MethylationArrayData
2.8 years ago FWNL15 • 0
1
vote
16
replies
3.2k
views
error in ChAMP loading file
ChAMP
updated 5 weeks ago by • 0 • written 17 months ago by • 0
3
votes
4
replies
2.9k
views
Error while using champ.svd() function in subset of data
ChAMP methylationepic epicarray epigenomics
updated 6.6 years ago by ▴ 140 • written 6.6 years ago by ▴ 10
4
votes
4
replies
2.9k
views
How to remove unwanted probes before normalization in 450k data
minfi 450k champ rnbeads
updated 8.1 years ago by 65k • written 8.1 years ago by ▴ 60
1
vote
8
replies
2.7k
views
Error in Champ for Bioconductor analyzing Methlayion array data
champ bioconductor contrastmatrix compare.group
updated 5.3 years ago by ▴ 270 • written 5.3 years ago by • 0
1
vote
3
replies
2.7k
views
normalization combination of noob + BMIQ/Quantile
minfi bmiq noob preprocessQuantile champ
updated 3.6 years ago by 65k • written 3.6 years ago by ▴ 50
0
votes
7
replies
2.6k
views
ERROR happens when install "DSS" package
methylationArrayAnalysis ChAMP DMP DSS
updated 18 months ago by 65k • written 23 months ago by • 0
1
vote
2
replies
2.5k
views
Error using ChAMP SVD analysis
ChAMP
updated 13 months ago by • 0 • written 2.8 years ago by • 0
2
votes
16
replies
2.5k
views
Methylation EPIC array: ChAMP package-champ.load added probes?
methylation epic champ champ.load() Methylation array
updated 4.3 years ago by ▴ 270 • written 4.3 years ago by ▴ 20
0
votes
1
reply
2.4k
views
ChAMP error: "Error in density.default(beta1.v[class1.v == 1]) :need at least 2 points to select a bandwidth automatically..."
ChAMP
updated 7.7 years ago by • 0 • written 8.5 years ago by • 0
2
votes
7
replies
2.4k
views
Blood cell composition adjustment in methylation EPIC array: ChAMP
MethylationArray methylationArrayAnalysis ChAMP
updated 6 months ago by • 0 • written 3.4 years ago by ▴ 20
1
vote
4
replies
2.4k
views
New version of ChAMP can not proceed through champ.DMP
champ
6.7 years ago sarka.vorackova • 0
1
vote
2
replies
2.3k
views
Beta-matrix - Differential methylation analysis
ChAMP tutorial
6.0 years ago Dave Emir • 0
2
votes
5
replies
2.3k
views
DMRcate fails in ChAMP package
ChAMP
updated 7.1 years ago by ▴ 90 • written 7.1 years ago by ▴ 10
1
vote
5
replies
2.2k
views
error while using champ.svd() function
champ
5.3 years ago sinha.puja ▴ 10
2
votes
3
replies
2.2k
views
Error in champ.load (v. 2.8.3)
champ ChAMP
updated 6.8 years ago by ▴ 90 • written 6.8 years ago by ▴ 10
0
votes
1
reply
2.1k
views
Tutorial: Differential Methylation Analysis using ChAMP
champ Tutorial
updated 4.8 years ago by ▴ 270 • written 4.8 years ago by • 0
3
votes
5
replies
2.1k
views
Why the LogFC and delta-beta value are different in ChAMP
DNAMethylation ChAMP
updated 8 weeks ago by • 0 • written 3.4 years ago by • 0
1
vote
3
replies
2.1k
views
champ.DMP phenotypes and covariates
champ champ.dmp()
updated 6.4 years ago by ▴ 270 • written 6.5 years ago by ▴ 10
0
votes
6
replies
2.1k
views
ChAMP filter removing good samples from different batch of EPIC arrays.
minfi champ
updated 6.7 years ago by ▴ 90 • written 6.7 years ago by • 0
0
votes
2
replies
2.1k
views
ChAMP Normalization on EPIC Methylation Data
ChAMP Normalization FunctionalNormalization methylation EPIC
5.5 years ago yuabrahamliu • 0
0
votes
5
replies
2.1k
views
DNA methylation analysis without raw data IDAT files
r illimina 450k methylation minfi champ tcga
updated 5.7 years ago by ▴ 270 • written 5.7 years ago by ▴ 60
2
votes
3
replies
2.1k
views
"Seems your IDAT file not from one Array"
EPIC methylation ChAMP
updated 6.0 years ago by ▴ 30 • written 6.0 years ago by • 0
3
votes
6
replies
2.0k
views
could not find function "champ.load"
ChAMP champ 2.9.10 methylationepic
6.1 years ago david.ch • 0
0
votes
2
replies
2.0k
views
Error using Bumphunter and Block finder using CHAMP
champ methylation 450k
7.4 years ago hrishi27n ▴ 20
0
votes
2
replies
2.0k
views
Error code using ChAMP/Bioconductor, unable to load data from EPIC methylation array
bioconductor methylation epic microarray champ
6.3 years ago csappleby-mallinder1 • 0
0
votes
2
replies
2.0k
views
ChAMP::champ.norm Error in champ.BMIQ(beta[, x], design.v, sampleID = colnames(beta)[x], : task 1 failed - "only defined on a data frame with all…
ChAMP methylation BMIQ
updated 5 months ago by • 0 • written 5.0 years ago by ▴ 20
0
votes
1
reply
1.9k
views
News: Bug in ChAMP package champ.SVD() function
champ methylation 450k SVD EPIC News
7.6 years ago Yuan Tian ▴ 90
1
vote
2
replies
1.9k
views
Manhattan plot from ChAMP data
champ plot manhattan plot
updated 7.1 years ago by ▴ 90 • written 7.1 years ago by ▴ 10
0
votes
3
replies
1.9k
views
minfi release 1.8
SNP Annotation GO probe SNPlocs PROcess minfi bumphunter ChAMP SNP Annotation GO probe
updated 10.2 years ago by ▴ 20 • written 10.2 years ago by ★ 4.2k
0
votes
1
reply
1.9k
views
ChAMP Methylation analysis error code "could not find function champ.load"
champ methylationepic
updated 6.2 years ago by ▴ 270 • written 6.2 years ago by • 0
0
votes
3
replies
1.9k
views
error in champ.DMR using DMRcate (v2.8.3)
champ dmrcate IlluminaHumanMethylationEPICanno.ilm10b2.hg19
updated 6.8 years ago by ▴ 90 • written 6.8 years ago by • 0
2
votes
5
replies
1.8k
views
Problem at champ.load
ChAMPdata ChAMP
updated 5 weeks ago by 65k • written 12 months ago by • 0
2
votes
5
replies
1.8k
views
Error in Champ for Bioconductor performing GSEA analysis on Methlayion array data
champ bioconductor methyaltion epic array
updated 5.2 years ago by • 0 • written 5.3 years ago by • 0
0
votes
7
replies
1.8k
views
error with champ.load
ChAMP champ methylation
updated 8 months ago by • 0 • written 4.0 years ago by • 0
0
votes
2
replies
1.7k
views
Loading RData files into ChAMP
microarray champ 450k
updated 8.5 years ago by • 0 • written 8.5 years ago by ▴ 10
2
votes
3
replies
1.7k
views
ChAMP was installed and library in R, however, I can't use the function
champ
6.1 years ago doctorjiangtao ▴ 10
1
vote
7
replies
1.7k
views
Error using champ.import
ChAMP EPICv2
updated 1 day ago by • 0 • written 9 months ago by • 0
0
votes
1
reply
1.7k
views
install ChAMP under Ubuntu 18.04 in R 3.4.4 with error "maximal number of DLLs reached..."
ChAMP software error installation
5.8 years ago chxp • 0
0
votes
6
replies
1.6k
views
Errors with champ.block
champ champ.block
6.4 years ago • updated 6.3 years ago tiroshamit • 0
0
votes
2
replies
1.6k
views
Use ChAMP to Find Differential Methylation Regions (DMR)
ChAMP DMR champ.DMR
5.5 years ago yuabrahamliu • 0
0
votes
2
replies
1.6k
views
Error in champ.CNA (v. 2.6.0)
champ
updated 6.1 years ago by • 0 • written 7.1 years ago by ▴ 10
0
votes
2
replies
1.6k
views
Some terms in EPIC Methylation Analysis
ChAMP SVD Array Slide Sample Plate
updated 5.5 years ago by ▴ 270 • written 5.5 years ago by • 0
0
votes
1
reply
1.6k
views
News: Plotly uprading issue in ChAMP package
ChAMP Epigenetics plotly Shiny GUI News
7.5 years ago • updated 7.3 years ago Yuan Tian ▴ 90
50 results • Page 1 of 1
Recent ...
Replies
Comment: DESeq filtering specific to contrasts by Carlin95 • 0
Fair enough, I guess it depends on the comparison being made, right? If one was interested in a feature comparing Timepoint A vs B, then it…
Comment: DESeq2 setting significant p-value by Dev • 0
Sir but when I put in the expression data via the csv file, it was showing the gene names then but now when i set it in the form factor it …
Answer: OrgDb for maize by James W. MacDonald 65k
``` > library(AnnotationHub) > hub <- AnnotationHub() |===========================| 100% snapshotDate(): 2023-10-23 > query(hu…
Comment: Which input file is used for DGEList in EgdeR? by i.atanasoai • 0
Understood, Thank you very much for the reply, very kind.
Comment: Which input file is used for DGEList in EgdeR? by Michael Love 41k
"gene_counts_length_scaled.tsv file generated by the nf-core be exactly that?" No that is the counts scaled by the length. Counts + offset…
Votes
Install/Switch between multiple versions of R, Rstudio, and Bioconductor
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Awards • All
Popular Question to shepherl 3.8k
Popular Question to BioinfGuru ▴ 30
Popular Question to Gordon Smyth 50k
Scholar to Peter Hickey ▴ 740
Popular Question to sropri • 0
Locations • All
Germany, 1 minute ago
United States, 1 minute ago
India, 1 minute ago
France, 7 minutes ago
France, 18 minutes ago
Traffic: 835 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6