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ChAMPdata
•
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0
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139
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how to solve this error?
ChAMPdata
ChAMP
4 weeks ago
Meghana
• 0
0
votes
2
replies
1.1k
views
Trouble Loading Data into Champ
loaddata
ChAMPdata
champload
R
ChAMP
updated 9 months ago by
hfbarrerat
• 0 • written 3.1 years ago by
Bethan
• 0
2
votes
5
replies
1.7k
views
Problem at champ.load
ChAMPdata
ChAMP
updated 6 days ago by
James W. MacDonald
65k • written 11 months ago by
angel
• 0
0
votes
1
reply
738
views
Error in ChAMP GUI
ChAMP
shiny
ChAMPdata
updated 2.0 years ago by
anna.stanislawska
• 0 • written 2.0 years ago by
Mari
• 0
0
votes
3
replies
995
views
Wrong terminology used on champ.load() output of ChAMP package?
ChAMPdata
ChAMP
updated 2.2 years ago by
Basti
▴ 750 • written 2.2 years ago by
mariat
• 0
0
votes
2
replies
1.1k
views
Why the order of sample names in the beta matrix affect the analysis results of Champ.DMP? What should I do?
ChAMP
limma
Bioconductor
ChAMPdata
2.6 years ago • updated 2.5 years ago
Jinyue
• 0
2
votes
1
reply
1.2k
views
How to download the ChAMP dependency ChAMPdata
ChAMP
ChAMPdata
updated 2.9 years ago by
shepherl
3.8k • written 2.9 years ago by
Federica
▴ 10
0
votes
2
replies
838
views
Error myDMP not found
Illumina
methylationArrayAnalysis
ChAMPdata
ChAMP
3.1 years ago
sissialva21
• 0
8 results • Page
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Comment: DEG Filtering
by
Gordon Smyth
50k
RMA normalization is good but batch correction using NOISeq isn't right. Data shouldn't be batch corrected before the limma analysis and NO…
Answer: maftools: Error in validateMaf(maf = maf, isTCGA = isTCGA, rdup = removeDuplicat
by
snijesh
▴ 20
You can try: using `read.delim` or `fread`. ``` my_maf = data.table::fread("path/to/maf/sample.maf") my_maf = read.maf(maf = my_maf) …
Comment: DEG Filtering
by
Amit
• 0
Hi Gordon, Thank you for your response and advice. I want to analyze Dataset GSE18090 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi) whic…
Comment: edgeR, 3 x 2 design with a batch effect and contrasts
by
Gordon Smyth
50k
Yes, that is a quote from [A guide to creating design matrices for gene expression experiments](https://bioconductor.org/packages/release/w…
Comment: edgeR, 3 x 2 design with a batch effect and contrasts
by
JKim
• 0
Thank you. I think I found why the order matters. > Although an intercept-free design matrix has been coded using the 0+ notation, the in…
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Answer: edgeR, 3 x 2 design with a batch effect and contrasts
Answer: Need help with creating and plotting temporal clustering analysis of DEGs
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
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