Showing : ChAMPdata • reset
1
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Error EPICv2 ChAMP
ChAMPdata IlluminaHumanMethylationEPICv2anno.20a1.hg38 ChAMP
updated 2 days ago by 65k • written 6 days ago by • 0
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how to solve this error?
ChAMPdata ChAMP
9 weeks ago Meghana • 0
2
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5
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1.9k
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Problem at champ.load
ChAMPdata ChAMP
updated 6 weeks ago by 65k • written 12 months ago by • 0
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1
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781
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Error in ChAMP GUI
ChAMP shiny ChAMPdata
updated 2.1 years ago by • 0 • written 2.1 years ago by • 0
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3
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1.0k
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Wrong terminology used on champ.load() output of ChAMP package?
ChAMPdata ChAMP
updated 2.3 years ago by ▴ 780 • written 2.3 years ago by • 0
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Why the order of sample names in the beta matrix affect the analysis results of Champ.DMP? What should I do?
ChAMP limma Bioconductor ChAMPdata
2.7 years ago • updated 2.6 years ago Jinyue • 0
2
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1.2k
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How to download the ChAMP dependency ChAMPdata
ChAMP ChAMPdata
updated 3.0 years ago by 3.8k • written 3.0 years ago by ▴ 10
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1.2k
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Trouble Loading Data into Champ
loaddata ChAMPdata champload R ChAMP
updated 11 months ago by • 0 • written 3.2 years ago by • 0
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2
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867
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Error myDMP not found
Illumina methylationArrayAnalysis ChAMPdata ChAMP
3.2 years ago sissialva21 • 0
9 results • Page 1 of 1
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Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
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C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
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