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ChAMPdata
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How to download the ChAMP dependency ChAMPdata
ChAMP
ChAMPdata
updated 12 months ago by
shepherl
3.1k • written 12 months ago by
Federica
▴ 10
0
votes
2
replies
378
views
Error myDMP not found
Illumina
methylationArrayAnalysis
ChAMPdata
ChAMP
15 months ago
sissialva21
• 0
0
votes
1
reply
327
views
Trouble Loading Data into Champ
loaddata
ChAMPdata
champload
R
ChAMP
updated 14 months ago by
Basti
▴ 280 • written 15 months ago by
Bethan
• 0
0
votes
3
replies
304
views
Wrong terminology used on champ.load() output of ChAMP package?
ChAMPdata
ChAMP
updated 4 months ago by
Basti
▴ 280 • written 4 months ago by
mariat
• 0
0
votes
2
replies
362
views
Why the order of sample names in the beta matrix affect the analysis results of Champ.DMP? What should I do?
ChAMP
limma
Bioconductor
ChAMPdata
9 months ago • updated 8 months ago
Jinyue
• 0
0
votes
1
reply
136
views
Error in ChAMP GUI
ChAMP
shiny
ChAMPdata
updated 9 weeks ago by
anna.stanislawska
• 0 • written 9 weeks ago by
Mari
• 0
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Comment: Reading multiple data segments from FCS 3.0 file
by
SamGG
▴ 270
You should better start a question, but here is some clues. While this operation is refered as concatenate you can find it as coerce in flo…
Answer: how to make a group to apply the data to CAMERA
by
Gordon Smyth
45k
See the [limma User's Guide](https://www.bioconductor.org/packages/3.15/bioc/vignettes/limma/inst/doc/usersguide.pdf) for how to undertake …
Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
by
Guido Hooiveld
★ 3.2k
To add to the extensive discussion above, you may also want to have a look at the so-called UPC algorithm, available in the [package][1] `S…
Answer: How to best visualize multi-level transcriptomics experiment data?
by
Gordon Smyth
45k
> One way is to extract the differentially expressed genes with p.val = 0.05 and logFC = +/-1.0 I strongly recommend using FDR < 0.05 and…
Comment: Reading multiple data segments from FCS 3.0 file
by
Goldpanda
• 0
Is there a way to combine the fcs files back into a single file as individual data segments?
Votes
Answer: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
Comment: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
A: coefficient not estimable (limma warning)
A: coefficient not estimable (limma warning)
A: conceptual question about FDR, FDR adjusted p-value and q-value
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