Showing : ChIPQC • reset
3
votes
12
replies
3.8k
views
ChIPQC failling when run ChIPQC() over 6 samples
chipqc
updated 6.7 years ago by ▴ 420 • written 9.1 years ago by • 0
3
votes
9
replies
2.9k
views
ChIPQC and broadPeak input
chipseq chipqc chip-seq
8.6 years ago lindahove ▴ 10
5
votes
11
replies
2.0k
views
ChIPQC Error in .Call2 NCList object is too deep
ChIPQC
updated 6.4 years ago by ▴ 420 • written 6.5 years ago by ▴ 10
4
votes
8
replies
2.3k
views
ChIPQC v1.4 fails uninformatively where version 1.2 works fine
chipqc
updated 8.8 years ago by ★ 5.1k • written 9.0 years ago by ▴ 140
0
votes
4
replies
1.6k
views
Unhelpful Errors Running ChIPQC on Computing Cluster
chipqc chipqcreport
6.7 years ago • updated 6.6 years ago jared.andrews07 ▴ 30
3
votes
6
replies
14k
views
Error: Faceting variables must have at least one value when plotting with ChIPQC
ChipQC chipqc
updated 18 months ago by • 0 • written 7.7 years ago by ▴ 10
0
votes
3
replies
1.3k
views
Problems with double read counts on ChIPQC
chipqc
updated 7.6 years ago by • 0 • written 7.6 years ago by • 0
2
votes
5
replies
1.5k
views
Error involving ChIPQCreport
ChIPQC
updated 7.0 years ago by ▴ 420 • written 7.1 years ago by • 0
4
votes
8
replies
2.2k
views
ChIPQC and/or Diffbind - retrieving normalized read counts for peaks from single sample
DiffBind ChIPQC
8.2 years ago JD ▴ 10
0
votes
3
replies
1.2k
views
ChIPQC reading more samples that it should
chipqc
6.8 years ago C T ▴ 140
3
votes
4
replies
1.4k
views
ChIPQC on samples without peaks and wrong total reads
chipqc
updated 7.6 years ago by ▴ 420 • written 7.6 years ago by ▴ 10
1
vote
3
replies
1.1k
views
ChIPQC installation does not force latest DiffBind version
chipqc diffbind chipqcreport
updated 6.9 years ago by ▴ 420 • written 6.9 years ago by ▴ 50
4
votes
2
replies
1.3k
views
ChIPQC : ChIPQCreport(experiment) swap memory overload
ChIPQC ChIPQCreport
updated 6.9 years ago by ▴ 420 • written 6.9 years ago by ▴ 40
0
votes
4
replies
1.8k
views
ChiPQC and paired-end data
ChIPQC ChIPQC
updated 9.7 years ago by ▴ 20 • written 9.8 years ago by ▴ 340
2
votes
5
replies
1.8k
views
Diffbind: dba.plot retrieve variance explained
diffbind chipqc
updated 6.6 years ago by ★ 5.1k • written 6.7 years ago by ▴ 40
1
vote
3
replies
2.7k
views
Downsampling ChIP-seq BAM files with spike in normalization factor before feeding into Diffbind
diffbind chipseq chipqc
updated 3.5 years ago by ★ 5.1k • written 6.1 years ago by ▴ 10
2
votes
6
replies
2.2k
views
ChIPQC: error during annotation compilation
ChIPQC
updated 5.6 years ago by ▴ 420 • written 5.6 years ago by ▴ 10
2
votes
1
reply
1.6k
views
DiffBind: Error in if (res$config$bCorPlot) { : the condition has length > 1
DiffBind ChIPQC
updated 19 months ago by ★ 5.1k • written 19 months ago by • 0
0
votes
1
reply
847
views
ChIPQC error: NCList object is too deep
ChIPQC
updated 5.2 years ago by ▴ 420 • written 5.3 years ago by • 0
0
votes
2
replies
3.2k
views
Problem loading bamfiles to ChIPQC
ChIPQC
9.3 years ago sergio.espeso-gil • 0
1
vote
4
replies
2.1k
views
ChIPQC: reads counts in bam do not match ones from samtools flagstat
chipqc
updated 9.1 years ago by ▴ 420 • written 9.1 years ago by • 0
3
votes
1
reply
3.2k
views
creating custom genome annotation for the ChIPQC package
ChIPSeq QC ChIPQC
updated 8.7 years ago by ▴ 420 • written 8.7 years ago by ▴ 160
4
votes
2
replies
1.7k
views
Confusing error when running ChIPQC
chipqc chipseq
updated 8.6 years ago by ▴ 420 • written 8.6 years ago by ★ 7.9k
3
votes
1
reply
1.1k
views
shiftApply verbosity (in ChIPQC)
ChIPQC s4vectors
updated 7.9 years ago by ▴ 420 • written 8.1 years ago by ▴ 140
0
votes
1
reply
2.0k
views
Error in ChIPQC: "Error in if (res >= minval) { : missing value where TRUE/FALSE needed"
chipqc
updated 7.9 years ago by ★ 5.1k • written 8.1 years ago by ▴ 140
0
votes
1
reply
1.3k
views
ChipQCSample error Error in `colnames<-`(`*tmp*`, value = c("A", "B", "C")) : length of 'dimnames' [2] not equal to array extent
chipseq chipqc
updated 8.0 years ago by ▴ 420 • written 8.0 years ago by • 0
1
vote
4
replies
1.5k
views
ChIPQC error: Error in generating sample data
ChIPQC
updated 7.9 years ago by ★ 5.1k • written 7.9 years ago by ▴ 30
3
votes
7
replies
2.3k
views
ChIPQC for a single sample (disabling facets)
ChipQc chipqc
7.8 years ago Coby Viner ▴ 50
4
votes
6
replies
2.0k
views
ChIPQC GRCh38 usage yields "Unsupported annotation:hg38"
chipqc ChIPQC
updated 7.6 years ago by ▴ 420 • written 7.6 years ago by ▴ 50
3
votes
6
replies
1.4k
views
ChIPQCreport yields a cryptic error if "Replicate" data is not specified
ChIPQC chipqc
updated 7.6 years ago by ★ 5.1k • written 7.6 years ago by ▴ 50
0
votes
4
replies
1.6k
views
ChIPQCreport Total number of duplicates differs from multiqc/fastqc & RelCC is Inf
ChIPQC ChIPQCreport
updated 6.9 years ago by ▴ 420 • written 6.9 years ago by ▴ 40
2
votes
5
replies
2.0k
views
ChIPQC gives Error subscript contains out-of-bounds ranges with custom transcript database
chipqc
updated 6.9 years ago by ▴ 420 • written 6.9 years ago by • 0
2
votes
1
reply
1.5k
views
ChIPQC with GRCh38/hg38 requires manual loading of hg38 annotation
chipqc
updated 6.9 years ago by ▴ 420 • written 6.9 years ago by ▴ 50
1
vote
2
replies
1.0k
views
ChIPQC report missing figures
chipqc software error
updated 6.9 years ago by ▴ 420 • written 6.9 years ago by ▴ 30
1
vote
3
replies
2.1k
views
ChipQC Error: first error: could not find function "seqlevels<-"
software error chipqc
6.8 years ago tirza.doniger ▴ 20
0
votes
1
reply
2.2k
views
Error computing metrics with ChIPQC (Bioconductor v3.5, ChIPQC v2.1.12)
chipqc chipqcreport
updated 6.8 years ago by ▴ 420 • written 6.8 years ago by • 0
0
votes
1
reply
2.6k
views
Unable to perform analysis on all the chromosomes with the latest version of ChIPQC 1.12
chipqc R
updated 6.8 years ago by ▴ 420 • written 6.8 years ago by • 0
0
votes
3
replies
1.6k
views
ChIPQC failed on chrM
ChIPQC
updated 6.8 years ago by ▴ 420 • written 6.8 years ago by • 0
0
votes
2
replies
1.0k
views
ChIPQC plots for input samples
chipqc
updated 6.8 years ago by ▴ 420 • written 6.8 years ago by ▴ 140
1
vote
1
reply
1.8k
views
ChIPQC bam and bed files question
chipqc
updated 6.8 years ago by ▴ 420 • written 6.8 years ago by • 0
0
votes
1
reply
2.0k
views
PCR bottleneck coefficient (PBC)
chipqc
updated 6.8 years ago by ★ 5.1k • written 6.8 years ago by ▴ 140
0
votes
3
replies
1.3k
views
ChiPQC run time error
ChiPQC
updated 6.8 years ago by ▴ 420 • written 6.8 years ago by • 0
0
votes
1
reply
1.5k
views
Can ChIPQC analyze mandarin duck ChIP-Seq data?
ChIPQC
updated 6.6 years ago by ▴ 420 • written 6.6 years ago by ▴ 20
0
votes
4
replies
2.2k
views
ChIPQC error: "non-zero exit status"
software error package installation chipqc txdb.hsapiens.ucsc.hg18.knowngene
updated 5.8 years ago by 25k • written 5.8 years ago by • 0
1
vote
7
replies
2.7k
views
ChipQC not loading files
ChipQC diffbind
updated 5.7 years ago by ▴ 420 • written 5.7 years ago by • 0
2
votes
2
replies
1.3k
views
ChIPQC gives Bam file has 297 contigs Error: subscript contains out-of-bounds indices
ChIP-seq ChIPQC QC
updated 4.7 years ago by ▴ 20 • written 5.2 years ago by ▴ 10
0
votes
1
reply
853
views
ChIPQC: Error in summary.factor
ChIPQC
updated 4.4 years ago by • 0 • written 4.5 years ago by • 0
0
votes
7
replies
1.8k
views
CHIPQC error regarding BiocParallel
CHIPQC Diffbind chipseq rory stark Thomas Carroll
updated 20 months ago by ▴ 40 • written 4.0 years ago by ▴ 10
2
votes
7
replies
1.9k
views
How to generate custom annotation for rat genome rn6 in ChIPQC
ChIPQC annotation rn6
updated 3 months ago by • 0 • written 3.6 years ago by • 0
0
votes
2
replies
1.7k
views
ChipQC 'names' attribute [9] must be the same length as the vector [2]'
chipqc
updated 3.2 years ago by • 0 • written 3.5 years ago by ▴ 40
50 results • Page 1 of 1
Recent ...
Replies
Comment: DESeq filtering specific to contrasts by Michael Love 41k
It will likely not filter it out, but really the per-dataset details would affect the results.
Comment: DESeq filtering specific to contrasts by Carlin95 • 0
Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
Comment: FilterByExpr low counts with small sample size by Jonathan ▴ 10
Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0
Thank you very much for your reply! I will do so. Kind regards, Seyram
Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0` by isaac.vock • 0
Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Awards • All
Popular Question to shepherl 3.8k
Popular Question to BioinfGuru ▴ 30
Popular Question to Gordon Smyth 50k
Scholar to Peter Hickey ▴ 740
Popular Question to sropri • 0
Locations • All
France, just now
Egypt, 5 minutes ago
Canada, 6 minutes ago
India, 11 minutes ago
Iran, 13 minutes ago
Traffic: 786 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6