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ChIPQCreport
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ChIPQC - can't read in bam files
chipqc
chipqcreport
5.6 years ago
molly_the_minotaur
▴ 30
0
votes
4
replies
1.6k
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Unhelpful Errors Running ChIPQC on Computing Cluster
chipqc
chipqcreport
6.7 years ago • updated 6.6 years ago
jared.andrews07
▴ 30
0
votes
4
replies
1.6k
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ChIPQCreport Total number of duplicates differs from multiqc/fastqc & RelCC is Inf
ChIPQC
ChIPQCreport
updated 6.9 years ago by
Thomas Carroll
▴ 420 • written 6.9 years ago by
ZheFrench
▴ 40
1
vote
3
replies
1.1k
views
ChIPQC installation does not force latest DiffBind version
chipqc
diffbind
chipqcreport
updated 6.9 years ago by
Thomas Carroll
▴ 420 • written 6.9 years ago by
Coby Viner
▴ 50
4
votes
2
replies
1.3k
views
ChIPQC : ChIPQCreport(experiment) swap memory overload
ChIPQC
ChIPQCreport
updated 6.9 years ago by
Thomas Carroll
▴ 420 • written 6.9 years ago by
ZheFrench
▴ 40
0
votes
2
replies
965
views
ChipQCreport coverage plot failure?
ChipQC
chipqcreport
5.7 years ago
tapio.envall
• 0
0
votes
1
reply
2.2k
views
Error computing metrics with ChIPQC (Bioconductor v3.5, ChIPQC v2.1.12)
chipqc
chipqcreport
updated 6.9 years ago by
Thomas Carroll
▴ 420 • written 6.9 years ago by
Roger
• 0
0
votes
1
reply
524
views
Empty ChipQC Report
ChipQCReport
updated 15 months ago by
Okan
• 0 • written 17 months ago by
stacy.genovese
• 0
8 results • Page
1 of 1
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Comment: get BM error
by
James W. MacDonald
65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Comment: get BM error
by
Fara
• 0
Thank you for your response. The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function
by
James W. MacDonald
65k
That's weird. I don't have any problem at all generating the `OrgDb` on my box. How big is the gene2pubmed.gz file? I get this: ``` gzip -…
Answer: get BM error
by
James W. MacDonald
65k
The genes you present are orthologous mappings from D. rerio to other teleost fishes, so it is probably going to be difficult to map to NCB…
Answer: How to retrieve gene ontology GO class from gene list?
by
James W. MacDonald
65k
You can also use a combination of the `org.Hs.eg.db` and `GO.db` packages. ``` > library(GO.db) > library(org.Hs.eg.db) > go <- m…
Votes
Answer: get BM error
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
Comment: Different Shrunk Log2FC according with reference
Reproducibility issue with scran together with lapply and BiocParallel
C: SGSeq: moving toward diffex from SGSeq analysis
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