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ChIPQCreport
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3
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5
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2.5k
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ChIPQC - can't read in bam files
chipqc
chipqcreport
5.6 years ago
molly_the_minotaur
▴ 30
0
votes
1
reply
2.2k
views
Error computing metrics with ChIPQC (Bioconductor v3.5, ChIPQC v2.1.12)
chipqc
chipqcreport
updated 6.9 years ago by
Thomas Carroll
▴ 420 • written 6.9 years ago by
Roger
• 0
0
votes
4
replies
1.6k
views
Unhelpful Errors Running ChIPQC on Computing Cluster
chipqc
chipqcreport
6.7 years ago • updated 6.6 years ago
jared.andrews07
▴ 30
0
votes
4
replies
1.6k
views
ChIPQCreport Total number of duplicates differs from multiqc/fastqc & RelCC is Inf
ChIPQC
ChIPQCreport
updated 6.9 years ago by
Thomas Carroll
▴ 420 • written 6.9 years ago by
ZheFrench
▴ 40
4
votes
2
replies
1.3k
views
ChIPQC : ChIPQCreport(experiment) swap memory overload
ChIPQC
ChIPQCreport
updated 6.9 years ago by
Thomas Carroll
▴ 420 • written 6.9 years ago by
ZheFrench
▴ 40
1
vote
3
replies
1.1k
views
ChIPQC installation does not force latest DiffBind version
chipqc
diffbind
chipqcreport
updated 6.9 years ago by
Thomas Carroll
▴ 420 • written 6.9 years ago by
Coby Viner
▴ 50
0
votes
2
replies
965
views
ChipQCreport coverage plot failure?
ChipQC
chipqcreport
5.7 years ago
tapio.envall
• 0
0
votes
1
reply
524
views
Empty ChipQC Report
ChipQCReport
updated 15 months ago by
Okan
• 0 • written 17 months ago by
stacy.genovese
• 0
8 results • Page
1 of 1
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Replies
Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs
by
Guangchuang Yu
★ 1.2k
an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.
Comment: Trying to use enrichGO
by
Guido Hooiveld
★ 3.9k
Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…
Comment: Different Shrunk Log2FC according with reference
by
andrebolerbarros
▴ 20
Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge
by
ATpoint
★ 4.0k
The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…
Answer: Different Shrunk Log2FC according with reference
by
ATpoint
★ 4.0k
Please see: https://support.bioconductor.org/p/p134551/ I asked basically the same before. In short, reference level might have an influ…
Votes
C: SGSeq: moving toward diffex from SGSeq analysis
DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds
Subset DEXSeqDataSet In DEXSeq
How to get all possible comparisons in DiffBind
Comment: get BM error
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