Bioconductor ChIPSeq

Showing : ChIPSeq • reset

votes

views

chipseq

updated 4 days ago by James W. MacDonald 65k • written 4 days ago by zhulin • 0

votes

replies

142

views

ChIPSeq annotation ChIPpeakAnno

10 weeks ago nilanjanamani88 • 0

vote

replies

367

views

chipseq DifferentialMethylation DESeq2

updated 11 weeks ago by Michael Love 41k • written 12 weeks ago by rebw25 • 0

votes

replies

161

views

bSubControl ChIPSeq DiffBind

3 months ago frueher • 0

votes

replies

317

views

csaw ChIPseq DiffBind

5 months ago jared.andrews07 ▴ 30

vote

428

views

DiffBind chipseq

updated 6 months ago by James W. MacDonald 65k • written 6 months ago by lin.pei26 • 0

votes

replies

271

views

ChIPpeakAnno ChIPSeq MotifDiscovery

6 months ago franciscrick41 • 0

votes

replies

1.1k

views

ChIPpeakAnno ChIPSeq

updated 8 months ago by James W. MacDonald 65k • written 8 months ago by Jerina ▴ 10

votes

replies

2.9k

views

DiffBind chipseq

updated 8 months ago by Rory Stark ★ 5.1k • written 9 months ago by ANAMIKA • 0

vote

replies

988

views

ChIPSeq DiffBind

updated 10 months ago by Rory Stark ★ 5.1k • written 11 months ago by lin.pei26 • 0

votes

replies

589

views

ChIPSeq annotate ChIPpeakAnno

updated 11 months ago by Kai Hu ▴ 70 • written 12 months ago by C T ▴ 140

votes

1.1k

views

diffbind chipseq

updated 11 months ago by lin.pei26 • 0 • written 4.6 years ago by danielaperry2015 • 0

vote

replies

1.8k

views

DiffBind R chipseq

updated 4 months ago by Rory Stark ★ 5.1k • written 6.6 years ago by kyliecode • 0

13 results • Page 1 of 1

Recent ...

Replies

Answer: Why p value inconsistent when using different number of pathway score? by ATpoint ★ 4.0k

Same answer as here: https://support.bioconductor.org/p/9157606/ Adding or removing data (samples, genes, pathways, observations...) chang…

Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Chris • 0

Thanks Robert!

Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Robert Castelo ★ 3.2k

Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…

Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0

I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…

Answer: Cannabis and KEGGgraph by deeenes ▴ 30

Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…

Votes

Comment: The difference when using Limma compare between 3 conditions vs 2 conditions

Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

Awards • All

Scholar to Robert Castelo ★ 3.2k

Popular Question to James W. MacDonald 65k