Showing : Cheminformatics • reset
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Comparing compounds in CheminneR
Cheminformatics ChemmineR ChemmineDrugs
8 months ago Sean • 0
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ChemmineOB expects libopenbabel.7.dylib but latest OpenBabel 2.4.1 contains libopenbabel.5.dylib
cheminf ChemmineOB Cheminformatics ChemmineR
2.7 years ago adelenelai • 0
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Where can I locate the bioassayR database?
bioassayr chemmineR cheminformatics
5.1 years ago Anthony Nash ▴ 20
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Can limma/other DE algorithms be used for differential analysis of chemical descriptors?
limma edger deseq2 cheminformatics
updated 5.7 years ago by ★ 28k • written 5.7 years ago by • 0
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cellHTS2 importa and analysing data from chemical compound screening
cellhts2 cheminformatics
updated 7.4 years ago by ▴ 160 • written 7.4 years ago by ▴ 810
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Bioc 3.3 Windows 10 eiR package fails to install
software error R cheminformatics package installation eiR
updated 7.9 years ago by • 0 • written 7.9 years ago by • 0
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BioC 2013, July 17 (Developer Day) 18-19: 'Early' registration deadline July 1
Cheminformatics Visualization Cancer Ovarian DEXSeq minfi DESeq2 BaseSpaceR epivizr minfi
10.8 years ago Martin Morgan 25k
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'Cheminformatics in R' workshop at the EBI: 17-18 May 2010
Metabolomics Cheminformatics Visualization xcms Metabolomics Cheminformatics Visualization
14.2 years ago Gabriella Rustici ▴ 60
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R/BioC workshops in Southern California
Cheminformatics Clustering Cheminformatics Clustering
15.8 years ago Thomas Girke ★ 1.7k
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R/BioC workshops in Southern California
Cheminformatics Clustering Cheminformatics Clustering
16.6 years ago Thomas Girke ★ 1.7k
10 results • Page 1 of 1
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Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Votes
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
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