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Cheminformatics
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Comparing compounds in CheminneR
Cheminformatics
ChemmineR
ChemmineDrugs
8 months ago
Sean
• 0
0
votes
1
reply
804
views
ChemmineOB expects libopenbabel.7.dylib but latest OpenBabel 2.4.1 contains libopenbabel.5.dylib
cheminf
ChemmineOB
Cheminformatics
ChemmineR
2.7 years ago
adelenelai
• 0
1
vote
1
reply
888
views
Where can I locate the bioassayR database?
bioassayr
chemmineR
cheminformatics
5.1 years ago
Anthony Nash
▴ 20
3
votes
1
reply
681
views
Can limma/other DE algorithms be used for differential analysis of chemical descriptors?
limma
edger
deseq2
cheminformatics
updated 5.7 years ago by
Aaron Lun
★ 28k • written 5.7 years ago by
perdedorium
• 0
2
votes
3
replies
1.1k
views
cellHTS2 importa and analysing data from chemical compound screening
cellhts2
cheminformatics
updated 7.4 years ago by
Joseph Barry
▴ 160 • written 7.4 years ago by
Andreia Fonseca
▴ 810
1
vote
3
replies
1.9k
views
Bioc 3.3 Windows 10 eiR package fails to install
software error
R
cheminformatics
package installation
eiR
updated 7.9 years ago by
khoran
• 0 • written 7.9 years ago by
rjrich
• 0
0
votes
0
replies
1.2k
views
BioC 2013, July 17 (Developer Day) 18-19: 'Early' registration deadline July 1
Cheminformatics
Visualization
Cancer
Ovarian
DEXSeq
minfi
DESeq2
BaseSpaceR
epivizr
minfi
10.8 years ago
Martin Morgan
25k
0
votes
0
replies
1.3k
views
'Cheminformatics in R' workshop at the EBI: 17-18 May 2010
Metabolomics
Cheminformatics
Visualization
xcms
Metabolomics
Cheminformatics
Visualization
14.2 years ago
Gabriella Rustici
▴ 60
0
votes
0
replies
871
views
R/BioC workshops in Southern California
Cheminformatics
Clustering
Cheminformatics
Clustering
15.8 years ago
Thomas Girke
★ 1.7k
0
votes
0
replies
945
views
R/BioC workshops in Southern California
Cheminformatics
Clustering
Cheminformatics
Clustering
16.6 years ago
Thomas Girke
★ 1.7k
10 results • Page
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Comment: Input Question for deseq.r
by
ATpoint
★ 4.0k
It is unclear what "deseq.r" is. It is not part of DESeq2, and almost certainly no part of RSeqAn. Please add details, and keep in mind tha…
Answer: DESEQ2 output gives multiple groups when only 2 groups are present
by
ATpoint
★ 4.0k
In the first PCA plot there is almost certainly some hidden character like whitespaces in the column from colData that encodes this group. …
Answer: A ComBat-seq issue: the covariates are confounded
by
ATpoint
★ 4.0k
```r > table(batch, group) group batch egfr gfp her2 1 0 12 5 2 6 6 0 ``` All of her2 is batch2, all of egfr i…
Comment: DESeq2 setting significant p-value
by
Dev
• 0
after running DESeq2 does it sort the value on the basis of pvalue, or anything, or does it give the data back in the input format I have …
Comment: DESeq filtering specific to contrasts
by
Carlin95
• 0
But wouldn't this result in a different gene set for each analysis stratification? How can you then compare if maybe gene x comes up in Tim…
Votes
Comment: Reading huge bismark coverage files using bbseq::read.bismark
Answer: Reading huge bismark coverage files using bbseq::read.bismark
Answer: Reading huge bismark coverage files using bbseq::read.bismark
Answer: How many of my genes from my gene list are in each KEGG pathway?
Comment: Light difference when using coef vs omit a group when compare 3 groups.
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