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ChemmineR
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264
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Comparing compounds in CheminneR
Cheminformatics
ChemmineR
ChemmineDrugs
7 months ago
Sean
• 0
0
votes
1
reply
790
views
ChemmineOB expects libopenbabel.7.dylib but latest OpenBabel 2.4.1 contains libopenbabel.5.dylib
cheminf
ChemmineOB
Cheminformatics
ChemmineR
2.6 years ago
adelenelai
• 0
0
votes
0
replies
1.3k
views
How to combined multiple *.mol files into a single *.sdf file using ChemmineR?
ChemmineR
Chemmin
ChemmineOB
2.9 years ago
sukissqz
• 0
3
votes
4
replies
1.3k
views
Error in ChemmineR function propOB() and ChemmineOB prop_OB()
ChemmineR
ChemmineOB
updated 3.2 years ago by
Thomas Girke
★ 1.7k • written 3.3 years ago by
teresadijor
• 0
2
votes
6
replies
1.1k
views
How to remove HCL mols in Chemminer
ChemmineR
Chemistry
updated 5.0 years ago by
khoran
• 0 • written 5.1 years ago by
Anthony Nash
▴ 20
1
vote
1
reply
889
views
Bioactivity assay DBs for cheminfo packages
bioassayR
ChemmineR
PubChem
updated 5.0 years ago by
Thomas Girke
★ 1.7k • written 5.0 years ago by
Anthony Nash
▴ 20
1
vote
1
reply
877
views
Where can I locate the bioassayR database?
bioassayr
chemmineR
cheminformatics
5.1 years ago
Anthony Nash
▴ 20
1
vote
4
replies
2.0k
views
How do I convert kegg info on drug to a format allowing me to calculate similarities?
keggrest
chemminer
fmcsr
graph
written 6.1 years ago by
Joris.Meys
• 0
0
votes
0
replies
809
views
Downloading 3D compounds from Pubchem in ChemmineR
chemminer
6.5 years ago
jubilantsundar
• 0
1
vote
2
replies
1.4k
views
drawing chemical from smile 2D/3D
chemminer
updated 6.8 years ago by
Thomas Girke
★ 1.7k • written 6.8 years ago by
Stane
▴ 40
0
votes
0
replies
942
views
Tversky' alpha and beta should not be int, should they?
ChemmineR
7.0 years ago
stephan.struckmann
• 0
0
votes
2
replies
1.4k
views
output of propOB function ChemmineR
ChemmineR
ChemmineOB
ChemmineTools
Drug
7.1 years ago
elisa.micarelli
▴ 10
0
votes
1
reply
2.0k
views
ChemmineR package - fpSim and cmp.similarity - Tanimoto kernels
ChemmineR
updated 7.9 years ago by
Thomas Girke
★ 1.7k • written 7.9 years ago by
ረ
• 0
0
votes
0
replies
1.1k
views
MCS & ChemineR
Network
Clustering
PROcess
ChemmineR
Network
Clustering
PROcess
ChemmineR
11.0 years ago
Thomas Girke
★ 1.7k
0
votes
0
replies
1.1k
views
ChemmineR Help
Clustering
ChemmineR
Clustering
ChemmineR
11.3 years ago
Thomas Girke
★ 1.7k
15 results • Page
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Comment: limma models out of memory issue on Slurm HPC
by
Jitendra
▴ 10
thanks Gordon, but our methylation epic array input file is quite big and we can't read it in R by just using laptop memory so we need to …
Comment: Doing comparison of RNA-seq data using EdgeR
by
Michael Love
41k
Just to clarify, when I originally posted the title and tags had listed "DESeq2" and then the post was changed after my answer was added. …
Comment: fgsea fork
by
shepherl
3.8k
Not quite sure what you mean by clone or fork the package on latest version of R. Bioconductor runs all builds on the latest version of R.…
Answer: Doing comparison of RNA-seq data using EdgeR
by
Gordon Smyth
50k
It's pretty easy to do a two-group comparison using edgeR, but you seem to be stuck at the initial stage of reading data into R. If you exp…
Answer: Differing results from plotMDS and PCAtools
by
Gordon Smyth
50k
The reason why the two plots are different is that the first plot is a PCA plot while the second is a biplot. Quite different plots. The P…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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