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Recent ...
Replies
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
alserg
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They are reorder in the decreasing order.
Comment: significant difference of p-values with dream() after updating VariancePartition
by
Le
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0
Thanks for your reply @gabrielhoffman !
I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…
Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs
by
sredemption
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Try
library(enrichplot)
dotplot(gsea_FS, showCategory=10, split=".sign") + facet_grid(.~.sign)
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
sropri
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Thank you for your reply and I know there is another post similar to this you had mentioned this. How are the genes that I mentioned in the…
Answer: FGSEA pre-ranked input in increasing order or decreasing
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alserg
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The genes are automatically ordered within `fgsea`, there is no need to sort them manually.
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