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Chromosome
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reset
1
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5
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2.5k
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how to plot human genome chromosome Ideogram with each length by Gviz
Gviz
chromosome
ideogram
updated 7.1 years ago by
bernatgel
▴ 150 • written 7.2 years ago by
dulunar
▴ 10
5
votes
4
replies
9.7k
views
Getting rs ids using chr coordinates | Biomart
SNP
rs id
Biomart
Chromosome
coordinates
updated 9 months ago by
James W. MacDonald
65k • written 3.7 years ago by
Mahan
• 0
0
votes
1
reply
785
views
Understand the chromosome name in homo sapiens gene database
homo sapiens
chromosome
updated 5.9 years ago by
James W. MacDonald
65k • written 5.9 years ago by
xchen8
• 0
1
vote
1
reply
487
views
Differential Expression by Chromosome using edgeR
edgeR
chromosome
RNAseq
updated 4.1 years ago by
swbarnes2
★ 1.3k • written 4.1 years ago by
missmoparker
• 0
0
votes
2
replies
772
views
Parsing error creating tx2gene object for tximport
tximport
GCF feature table
parsing error
chromosome
updated 4.0 years ago by
Michael Love
41k • written 4.0 years ago by
knholm
• 0
0
votes
4
replies
772
views
Genomic Annotation Package Ensembl
Chromosome
Annotation
updated 3.7 years ago by
James W. MacDonald
65k • written 3.7 years ago by
Bine
▴ 40
3
votes
5
replies
1.8k
views
Splitting a TxDB or GRanges by Chromosome
GenomicRanges
split
chromosome
TxDb
updated 2.4 years ago by
Hervé Pagès
16k • written 2.4 years ago by
jon.klonowski
▴ 40
0
votes
2
replies
542
views
How to find the number of protein-coding genes in each chromosome arm in human?
gene
chromosome
proteincodinggene
12 months ago
Liliian
• 0
2
votes
3
replies
1.9k
views
What's the best way to retrieve the sizes (lengths) of chromosomes for a reference genome assembly?
bsgenome
chromosome
reference genome
updated 6.1 years ago by
Hervé Pagès
16k • written 6.2 years ago by
Nathan Sheffield
▴ 10
0
votes
0
replies
503
views
Conversion of RefSeq data to chromosomal position
RefSeq
Chromosome
Mutalyzer
4.0 years ago
heiko_kin
▴ 60
10 results • Page
1 of 1
Recent ...
Replies
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function
by
Gayatri
• 0
What I meant is even after deleting the NCBI.sqlite file, and re-running the script, an empty NCBI.sqlite file (0 kb) is created which is c…
Comment: DESeq2 output used for PCA plot on R studio
by
ATpoint
★ 4.0k
> Increase variability for mutants: use larger subtractive modifiers I was thinking the same as swbarnes. You're doing some data munging h…
Comment: minfi::read.metharray.exp
by
Basti
▴ 780
This is indeed correct now !
Comment: get BM error
by
Fara
• 0
Thank you for the reply. The examples are these. ENSGACG00000014473 ENSGACG00000015168 ENSGACG00000007529
Comment: get BM error
by
Mike Smith
★ 6.5k
Can you provide an example of the Ensemble IDs you're trying to convert?
Votes
Comment: get BM error
Answer: Citation for edgeR user guide
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
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Michael Love
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