Bioconductor Chromosome

Showing : Chromosome • reset

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9.7k

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SNP rs id Biomart Chromosome coordinates

updated 9 months ago by James W. MacDonald 65k • written 3.7 years ago by Mahan • 0

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1.8k

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GenomicRanges split chromosome TxDb

updated 2.4 years ago by Hervé Pagès 16k • written 2.4 years ago by jon.klonowski ▴ 40

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1.9k

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bsgenome chromosome reference genome

updated 6.1 years ago by Hervé Pagès 16k • written 6.2 years ago by Nathan Sheffield ▴ 10

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487

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edgeR chromosome RNAseq

updated 4.1 years ago by swbarnes2 ★ 1.3k • written 4.1 years ago by missmoparker • 0

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2.5k

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Gviz chromosome ideogram

updated 7.1 years ago by bernatgel ▴ 150 • written 7.2 years ago by dulunar ▴ 10

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542

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gene chromosome proteincodinggene

12 months ago Liliian • 0

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785

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homo sapiens chromosome

updated 5.9 years ago by James W. MacDonald 65k • written 5.9 years ago by xchen8 • 0

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504

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RefSeq Chromosome Mutalyzer

4.0 years ago heiko_kin ▴ 60

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773

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tximport GCF feature table parsing error chromosome

updated 4.0 years ago by Michael Love 41k • written 4.0 years ago by knholm • 0

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772

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Chromosome Annotation

updated 3.7 years ago by James W. MacDonald 65k • written 3.7 years ago by Bine ▴ 40

10 results • Page 1 of 1

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Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs by Guangchuang Yu ★ 1.2k

an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.

Comment: Trying to use enrichGO by Guido Hooiveld ★ 3.9k

Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…

Comment: Different Shrunk Log2FC according with reference by andrebolerbarros ▴ 20

Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…

Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by ATpoint ★ 4.0k

The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…

Answer: Different Shrunk Log2FC according with reference by ATpoint ★ 4.0k

Please see: https://support.bioconductor.org/p/p134551/ I asked basically the same before. In short, reference level might have an influ…

Votes

C: SGSeq: moving toward diffex from SGSeq analysis

DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds

Subset DEXSeqDataSet In DEXSeq

How to get all possible comparisons in DiffBind

Comment: get BM error

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Scholar to ATpoint ★ 4.0k