Bioconductor Coldata

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deseq2 coldata

updated 5.4 years ago by swbarnes2 ★ 1.3k • written 5.4 years ago by mjrarcher ▴ 10

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3.1k

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variantannotation coldata

updated 5.5 years ago by Valerie Obenchain ★ 6.8k • written 5.6 years ago by lvclark ▴ 10

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3.5k

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deseq2 coldata NA

updated 5.7 years ago by Michael Love 41k • written 5.7 years ago by t.kuilman ▴ 170

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1.4k

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multiassayexperiment colData

updated 6.4 years ago by Levi Waldron ★ 1.1k • written 6.4 years ago by Lluís Revilla Sancho ▴ 730

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530

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ColData pheatmap DESeq2

written 10 months ago by dania.khalid • 0

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1.4k

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deseq2 levels factor colData

updated 5.1 years ago by Michael Love 41k • written 5.1 years ago by ariel ▴ 20

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979

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SingleCellExperiment colData rename

updated 14 months ago by Basti ▴ 770 • written 14 months ago by achoppe ▴ 10

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565

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BiSeq Coldata

3.9 years ago akhaira • 0

8 results • Page 1 of 1

Recent ...

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Comment: DESeq filtering specific to contrasts by Michael Love 41k

It will likely not filter it out, but really the per-dataset details would affect the results.

Comment: DESeq filtering specific to contrasts by Carlin95 • 0

Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…

Comment: FilterByExpr low counts with small sample size by Jonathan ▴ 10

Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0

Thank you very much for your reply! I will do so. Kind regards, Seyram

Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0` by isaac.vock • 0

Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…

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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

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Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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