Showing : ComplexHeatmap • reset
3
votes
2
replies
18k
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Plotting several heatmaps onto the same grid with the ComplexHeatmap package in R
complexheatmap
updated 7.6 years ago by ▴ 200 • written 7.6 years ago by ▴ 10
5
votes
2
replies
13k
views
Complex Heatmap - hide one legend, show 2 - out off three annotations
complexheatmap bioconductor annotation heatmap legend
8.0 years ago • updated 7.8 years ago annkatrin.goepfert ▴ 10
0
votes
2
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11k
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ComplexHeatmap - how to change the position of the legend of rowAnnotation
ComplexHeatmap
updated 3.8 years ago by ▴ 260 • written 3.8 years ago by • 0
5
votes
12
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10k
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Combining ComplexHeatmap with other plot types
complexheatmap ggplot2
updated 6.4 years ago by ▴ 260 • written 6.4 years ago by ▴ 10
1
vote
6
replies
9.8k
views
Change fontsize/remove name of annotation ComplexHeatmap package
r rnaseq complexHeatmap annotation
updated 3.8 years ago by ▴ 260 • written 3.8 years ago by ▴ 10
8
votes
1
reply
9.2k
views
extracting the genes associated with the clusters
heatmap.2 pheatmap complexheatmap heatplus
updated 7.1 years ago by ▴ 680 • written 7.1 years ago by ▴ 670
4
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4
replies
9.2k
views
ComplexHeatmap Scale by Row
ComplexHeatmap heatmap
updated 8.9 years ago by 65k • written 8.9 years ago by ▴ 370
1
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5
replies
8.7k
views
How to add both row and column labels to Complexheatmap
complexheatmap labels
6.6 years ago dilawerkh4 • 0
3
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2
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6.7k
views
ComplexHeatmap removes row labels if annotation is added
annotation show_row_names complexheatmap
4.7 years ago alexw858 • 0
3
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4
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6.3k
views
ComplexHeatmap - Annotation without a named vector
complexheatmap
updated 7.7 years ago by ▴ 200 • written 7.7 years ago by ▴ 370
2
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4
replies
5.9k
views
Complexheatmap Installation Issue
ComplexHeatmap
3.3 years ago legro.melanie • 0
0
votes
6
replies
4.6k
views
Error: node stack overflow when trying to plot large dataset using Complexheatmap
Complexheatmap
updated 4.6 years ago by ▴ 260 • written 4.6 years ago by ▴ 110
3
votes
2
replies
4.3k
views
Automatic color assignment for annotations on ComplexHeatmap
complexheatmap
6.6 years ago CodeAway ▴ 70
5
votes
5
replies
4.1k
views
ComplexHeatmap - Heatmap function within a for loop
ComplexHeatmap for loop Heatmap function
updated 21 months ago by • 0 • written 7.7 years ago by ▴ 40
1
vote
4
replies
4.0k
views
complexHeatmap - distance calculation
complexheatmap
8.2 years ago annkatrin.goepfert ▴ 10
2
votes
1
reply
3.8k
views
Make UpSet function display numbers above the bars
ComplexHeatmap
updated 5.1 years ago by ▴ 260 • written 5.1 years ago by ▴ 40
2
votes
1
reply
3.5k
views
Assign custom dendrogram to ComplexHeatmap Heatmap object
complexheatmap heatmap.2 dendrogram dendextend heatmap
updated 7.5 years ago by ▴ 200 • written 7.5 years ago by ▴ 660
2
votes
5
replies
3.3k
views
News: New in DiffBind 3.2: dba.plotProfile() - Peak profiles and profile heatmaps
profileplyr ATACSeq DiffBind ComplexHeatmap ChIPSeq
updated 16 months ago by • 0 • written 2.9 years ago by ★ 5.1k
3
votes
7
replies
3.1k
views
Handle missing values in the z-score matrix while plotting heatmap in the ComplexHeatmap
matrix heatmap ComplexHeatmap missing values R
updated 4.6 years ago by ▴ 260 • written 4.6 years ago by ▴ 10
3
votes
3
replies
3.0k
views
ComplexHeatmap install error
ComplexHeatmap
updated 22 months ago by 65k • written 22 months ago by ▴ 10
4
votes
3
replies
2.8k
views
Align legends to each heatmap in a ComplexHeatmap with 2 heatmaps
complexheatmap r
updated 4.9 years ago by ▴ 260 • written 4.9 years ago by ▴ 190
3
votes
4
replies
2.8k
views
ComplexHeatmap - Default distance and hierarchical clustering methods
ComplexHeatmap Complex
updated 14 months ago by ▴ 40 • written 14 months ago by • 0
0
votes
1
reply
2.4k
views
Complexheatmap question on sorting columns
complexheatmap
8.0 years ago tmcelrath • 0
1
vote
2
replies
2.3k
views
legend with gradient in ComplexHeatmap
complexheatmap
6.8 years ago AR3513 • 0
0
votes
1
reply
2.2k
views
ComplexHeatmap package will not display heatmaps
ComplexHeatmap software error
updated 5.0 years ago by 65k • written 5.0 years ago by • 0
2
votes
3
replies
2.2k
views
Complexheatmap row-names not showing up
ComplexHeatmap
22 months ago krushnach80 • 0
2
votes
3
replies
2.1k
views
about MAFTOOLS and ComplexHeatmap
complexheatmap maftools
updated 6.7 years ago by ▴ 90 • written 6.7 years ago by ▴ 670
2
votes
2
replies
2.1k
views
ComplexHeatmap: Change font size of annotation axis values
ComplexHeatmap
updated 8 months ago by • 0 • written 21 months ago by ▴ 10
3
votes
2
replies
2.1k
views
Clustering differentially expressed genes in response to multiple treatments (using edgeR)
edger complexheatmap R clustering
updated 4.0 years ago by 50k • written 4.0 years ago by • 0
3
votes
2
replies
2.0k
views
Complex Heatmap shows just one color
Heatmap ComplexHeatmap colorRamp
3.0 years ago Assa Yeroslaviz ★ 1.5k
0
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1
reply
2.0k
views
ComplexHeatmap: setting column_order changes plotted values
ComplexHeatmap
3.1 years ago vanbelj ▴ 30
0
votes
5
replies
2.0k
views
Problem trying to decorate a heatmap inside a function
complexheatmap
7.0 years ago AR3513 • 0
1
vote
1
reply
2.0k
views
ComplexHeatmap: Not able to change the annotations size of the heatmap
ComplexHeatmap Anno Annotation
updated 2.6 years ago by ▴ 260 • written 2.6 years ago by ▴ 10
1
vote
2
replies
1.9k
views
Error when using multiple heatmaps in ComplexHeatmaps
ComplexHeatmap bug
7.2 years ago brt381 • 0
0
votes
1
reply
1.8k
views
about using the names of the rows and columns in ComplexHeatmap
complexheatmap
6.6 years ago Bogdan ▴ 670
0
votes
2
replies
1.7k
views
Extracting subclusters from original data
complexheatmap metabolomics
updated 6.7 years ago by ▴ 130 • written 6.7 years ago by • 0
0
votes
2
replies
1.6k
views
ComplexHeatmap column dendrogram
complexheatmap
updated 6.1 years ago by ▴ 200 • written 6.1 years ago by 65k
0
votes
0
replies
1.5k
views
Problem with heatmap by ComplexHeatmap
complexheatmap Rstudio NOISeq
6.6 years ago Luiz • 0
2
votes
5
replies
1.5k
views
ComplexHeatmap - z-score color coding failed
heatmaps ComplexHeatmap
16 months ago Katharina • 0
0
votes
1
reply
1.5k
views
Oncoprint function in ComplexHeatmap
complexheatmap
6.9 years ago Bogdan ▴ 670
0
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1
reply
1.5k
views
How to manage multiple legends in heatmap_legend_param (ComplexHeatmap) ?
ComplexHeatmap complexheatmap
7.6 years ago g.atla ▴ 10
0
votes
1
reply
1.4k
views
ComplexHeatmap's UpSet plots: how to convert a binary matrix into a list of sets
ComplexHeatmap UpSet
3.9 years ago moldach ▴ 20
0
votes
1
reply
1.4k
views
Complex Heatmap - correlation matrix - how to have exact same annotation with same colors for rows and columns?
R heatmaps ComplexHeatmap Heatma
updated 19 months ago by ▴ 260 • written 20 months ago by • 0
2
votes
2
replies
1.3k
views
about reshaping a data frame
maftools complexheatmap
updated 6.8 years ago by ▴ 110 • written 6.8 years ago by ▴ 670
0
votes
1
reply
1.2k
views
Error with ComplexHeatmap. Showing only part of image.
Complexheatmap
5.2 years ago Goku • 0
0
votes
1
reply
1.2k
views
Annotated heatmap limits
complexheatmap
updated 8.4 years ago by ★ 13k • written 8.4 years ago by • 0
0
votes
0
replies
1.2k
views
Changing row height in ComplexHeatmap
complexheatmap
updated 6.6 years ago by 50k • written 6.6 years ago by • 0
0
votes
1
reply
1.1k
views
Drawing a HeatMapList while retaining the original row order of each heat map
complexheatmap
updated 7.1 years ago by ★ 13k • written 7.1 years ago by ▴ 150
0
votes
1
reply
1.1k
views
ComplexHeatmap Legend labels
complexheatmap
7.7 years ago vedran.franke • 0
0
votes
2
replies
1.1k
views
K Means Clustering Two Matrices for ComplexHeatmap
complexheatmap R
3.6 years ago pthom010 • 0
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Comment: Which input file is used for DGEList in EgdeR? by i.atanasoai • 0
Understood, Thank you very much for the reply, very kind.
Comment: Which input file is used for DGEList in EgdeR? by Michael Love 41k
"gene_counts_length_scaled.tsv file generated by the nf-core be exactly that?" No that is the counts scaled by the length. Counts + offset…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Michael Love 41k
These genes are fine. They are just the ones where, by chance, the sample variance is below the sample mean. It happens. DESeq2 brings thes…
Comment: DEG with low counts by Michael Love 41k
These counts are too low, only a few samples above a count of 10. So for typical RNA-seq data that is underpowered to call differences. It…
Comment: DESeq filtering specific to contrasts by Michael Love 41k
If the counts are too low it in one group then you can't make the comparison either way (whether they are filtered out or just under-powere…
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