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Conda
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Cannot use Bioconductor with new conda R installation?
bioconductor
biocinstaller
installation
conda
7.1 years ago
jol.espinoz
▴ 40
1
vote
1
reply
1.4k
views
diffbind installation through Conda fails
DiffBind
conda
updated 4.0 years ago by
Rory Stark
★ 5.2k • written 4.0 years ago by
Benjamin Ostendorf
▴ 90
1
vote
1
reply
4.7k
views
Setting up bioconductor on a Linux server using conda
dada2
conda
phyloseq
updated 4.0 years ago by
James W. MacDonald
68k • written 4.0 years ago by
Daniel
• 0
0
votes
1
reply
1.4k
views
conda install of diffHic
diffHic
conda
updated 5.6 years ago by
Aaron Lun
★ 28k • written 5.6 years ago by
smithgr
• 0
0
votes
1
reply
1.4k
views
Conda Env & biocLite("affyio") : < undefined symbol: gzclose >
Conda
affyio
error
6.4 years ago
benjamin.saintpierre
• 0
0
votes
3
replies
1.6k
views
Reason: image not found Error: package GenomeInfoDb could not be loaded
deseq2
conda
6.4 years ago
adam.cribbs
▴ 10
0
votes
5
replies
4.3k
views
source(biocLite.R) leads to this error >>> Peer certificate cannot be authenticated with given CA certificates
biocinstaller
installation
install
source
conda
updated 8.6 years ago by
Martin Morgan
25k • written 8.6 years ago by
jol.espinoz
▴ 40
7 results • Page
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Answer: Use of org.Rn.eg.db with GRCr8 reference genome
by
James W. MacDonald
68k
You've got it backwards. It should be ``` adult_res_df$symbol <- mapIds(org.Rn.eg.db, keys = rownames(adult_res_df), column = "ENSEMBL"…
Comment: DESeq2 swap ensembl gene id rownames with gene symbol column
by
Erika
• 0
Alternatively, you could have added a column with the common gene names. Assuming your dataframe `df` was created using `DESeq()`, somethin…
Answer: Clarification on GOALL / GO2ALLORFs mapping
by
James W. MacDonald
68k
It appears that 'negative regulation of glycogen biosynthesis' has an 'is a' relationship with 'glycogen biosynthetic process' https://www.…
Comment: Can't post a question?
by
DavideSant
• 0
Thank you, this was super useful!
Comment: Error in retrieving clinical data
by
silickas
• 0
Thank you for the reply. I will try to do that next time. This time instead, I used the GenomicDataCommons package to download clinical dat…
Votes
Comment: Can't post a question?
Answer: Limma - Complex 2-way multi-level contrast with paired samples
Answer: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
Help with creation of an OrgDB package and conduction of a bioinformatical analysis of gene expression
Answer: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf
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