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Conda
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Reason: image not found Error: package GenomeInfoDb could not be loaded
deseq2
conda
6.3 years ago
adam.cribbs
▴ 10
1
vote
1
reply
4.5k
views
Setting up bioconductor on a Linux server using conda
dada2
conda
phyloseq
updated 3.9 years ago by
James W. MacDonald
68k • written 3.9 years ago by
Daniel
• 0
1
vote
1
reply
3.6k
views
Cannot use Bioconductor with new conda R installation?
bioconductor
biocinstaller
installation
conda
7.0 years ago
jol.espinoz
▴ 40
0
votes
5
replies
4.3k
views
source(biocLite.R) leads to this error >>> Peer certificate cannot be authenticated with given CA certificates
biocinstaller
installation
install
source
conda
updated 8.5 years ago by
Martin Morgan
25k • written 8.5 years ago by
jol.espinoz
▴ 40
0
votes
1
reply
1.4k
views
conda install of diffHic
diffHic
conda
updated 5.5 years ago by
Aaron Lun
★ 28k • written 5.5 years ago by
smithgr
• 0
1
vote
1
reply
1.4k
views
diffbind installation through Conda fails
DiffBind
conda
updated 3.9 years ago by
Rory Stark
★ 5.2k • written 3.9 years ago by
Benjamin Ostendorf
▴ 90
0
votes
1
reply
1.4k
views
Conda Env & biocLite("affyio") : < undefined symbol: gzclose >
Conda
affyio
error
6.3 years ago
benjamin.saintpierre
• 0
7 results • Page
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Comment: Weird p-values using DESeq2?
by
ATpoint
★ 4.7k
This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `ntd()` or `vst/…
Answer: Weird p-values using DESeq2?
by
Wolfgang Huber
★ 13k
Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…
Comment: How to visualize these pathways using pathview
by
ingrid.h
• 0
Yes I have seen it, thanks.
Comment: Store Matrix in DataFrame Cell
by
Dario Strbenac
★ 1.6k
It does not appear to work. > DataFrame(name = "test", value = list(matrix(1:4, ncol = 2))) DataFrame with 2 rows and 3 columns …
Comment: Overcoming confounding in batch effect correction
by
Dario Strbenac
★ 1.6k
Actually, it is directly related. ComBat-seq is a part of [sva][1] package. It should use sva tag. [1]: https://bioconductor.org/package…
Votes
A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo
Comment: Weird p-values using DESeq2?
Comment: Overcoming confounding in batch effect correction
Answer: Store Matrix in DataFrame Cell
Answer: enrichGOgradient color change
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