Biostar Conda

Showing : Conda • reset

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983

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deseq2 conda

4.3 years ago adam.cribbs ▴ 10

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2.0k

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dada2 conda phyloseq

updated 22 months ago by James W. MacDonald 62k • written 22 months ago by Daniel • 0

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2.8k

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bioconductor biocinstaller installation conda

4.9 years ago jol.espinoz ▴ 40

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3.2k

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biocinstaller installation install source conda

updated 6.5 years ago by Martin Morgan 25k • written 6.5 years ago by jol.espinoz ▴ 40

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600

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diffHic conda

updated 3.5 years ago by Aaron Lun ★ 28k • written 3.5 years ago by smithgr • 0

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637

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DiffBind conda

updated 22 months ago by Rory Stark ★ 4.6k • written 22 months ago by Benjamin Ostendorf ▴ 90

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749

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Conda affyio error

4.3 years ago benjamin.saintpierre • 0

7 results • Page 1 of 1

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Comment: pathview says my nonmodel species is unknown: "species invalid" by Guido Hooiveld ★ 3.5k

Does a restart of R help? Does a reinstall of the library `png` help? In a fresh R-session, what is the output from `BiocManager::valid()…

Comment: Don't let TopGo to trimm long GO names by James W. MacDonald 62k

Did you not notice that this has been answered *as part of this thread that you posted in?*

Comment: pathview says my nonmodel species is unknown: "species invalid" by nute11a • 0

Hi Luo, thank you so much for your helpful comment. While I was able to get this to work and visualize my interesting KEGG pathways (yay!) …

Comment: Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA) by Wolfgang Huber 13k

Hi Ben, your first step should be to upgrade to the current versions of R and Bioconductor. There is really little point in trouble-shooti…

Answer: Is ther an annotation package for sheep (Ovis aries) by Guido Hooiveld ★ 3.5k

Yes, there is! An `EnsDb` for sheep can be obtained through the so-called `AnnotationHub`. See James' and my posts in the thread linked t…

Votes

FDR and padj in deseq and edger

Comment: Mutect version, matched normal and manual curation in PureCN

Answer: Is ther an annotation package for sheep (Ovis aries)

Is ther an annotation package for sheep (Ovis aries)

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Scholar to James W. MacDonald 62k

Commentator to Michael Love 39k