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News: European Bioconductor Conference 2023 planning
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updated 3 days ago by • 0 • written 18 months ago by ▴ 70
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News: Call for proposals: European CarpentryConnect - 12-14 November 2024, at EMBL Heidelberg
carpentry conference
17 days ago Wolfgang Huber ★ 13k
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News: Deadline Extended - BioC2024 Abstracts and Sticker Contest - April 1st!
BioC2024 Conference Bioconductor
4 weeks ago Maria Doyle ▴ 70
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News: BioC2024 abstract submission is open!
BioC2024 Conference Bioconductor
updated 5 weeks ago by • 0 • written 9 weeks ago by ▴ 70
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News: BioC2024 registration is now open!
BioC2024 Conference Bioconductor Community
7 weeks ago Maria Doyle ▴ 70
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News: EuroBioC2024 abstract submission is open!
Conference Bioconductor EuroBioC2024
10 weeks ago Maria Doyle ▴ 70
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News: EMBO|EMBL Conference "AI and Biology"
EMBL Heidelberg AI Conference
5 months ago Wolfgang Huber ★ 13k
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News: News: BioCAsia2023 Abstract Submission & Registration Now Open!
Events BioCAsia Conference
7 months ago Maria Doyle ▴ 70
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News: Reminder: BioC2023 in-person registration closes 19th July!
Bioconductor BioC2023 Conference
9 months ago Maria Doyle ▴ 70
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News: BioC2023 abstract submission is now open!
presentation BioC2023 Conference community Bioconductor
written 14 months ago by ▴ 70
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Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
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C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
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