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News: News: BioCAsia2023 Abstract Submission & Registration Now Open!
Events BioCAsia Conference
7 months ago Maria Doyle ▴ 70
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News: BioC2024 abstract submission is open!
BioC2024 Conference Bioconductor
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News: Deadline Extended - BioC2024 Abstracts and Sticker Contest - April 1st!
BioC2024 Conference Bioconductor
4 weeks ago Maria Doyle ▴ 70
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News: Reminder: BioC2023 in-person registration closes 19th July!
Bioconductor BioC2023 Conference
9 months ago Maria Doyle ▴ 70
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News: BioC2023 abstract submission is now open!
presentation BioC2023 Conference community Bioconductor
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News: European Bioconductor Conference 2023 planning
Europe Conference EuroBioC Events News
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News: EuroBioC2024 abstract submission is open!
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10 weeks ago Maria Doyle ▴ 70
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News: Call for proposals: European CarpentryConnect - 12-14 November 2024, at EMBL Heidelberg
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17 days ago Wolfgang Huber ★ 13k
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News: EMBO|EMBL Conference "AI and Biology"
EMBL Heidelberg AI Conference
5 months ago Wolfgang Huber ★ 13k
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News: BioC2024 registration is now open!
BioC2024 Conference Bioconductor Community
7 weeks ago Maria Doyle ▴ 70
10 results • Page 1 of 1
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Comment: How to retrieve gene ontology GO class from gene list? by bandconductor • 0
Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k
Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0
Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…
Comment: PCA plot suggestions by JKim • 0
cross post: https://www.biostars.org/p/9593486/
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k
You cannot correct for technical variability due to batch if samples are nested in batch. The technical and biological differences are comp…
Votes
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
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Scholar to James W. MacDonald 65k
Supporter to JKim • 0
Popular Question to Gordon Smyth 50k
Popular Question to Chris • 0
Supporter to Jonathan ▴ 10
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