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DESeq2 contrast DifferentialExpression

28 days ago • updated 22 days ago Chanderkant Chaudhary • 0

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contrast edgeR DESeq2

updated 10 months ago by James W. MacDonald 65k • written 10 months ago by Cristina • 0

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deseq2 contrast synergy

updated 9 months ago by Jane ▴ 10 • written 4.9 years ago by steven wink ▴ 90

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Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k

I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …

Comment: Theoretical WGCNA Question by Garrett • 0

Thanks Peter!

Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0

Thank you!

Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240

They are reorder in the decreasing order.

Comment: significant difference of p-values with dream() after updating VariancePartition by Le • 0

Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…

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Scholar to Peter Hickey ▴ 740