Bioconductor Contrasts

Showing : Contrasts • reset

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276

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design edgeR contrasts

updated 5 weeks ago by Gordon Smyth 50k • written 5 weeks ago by JKim • 0

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639

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MultipleComparison DESeq2 Genetics contrasts RNASeq

updated 9 months ago by James W. MacDonald 65k • written 9 months ago by a26fd14e • 0

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552

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contrasts DESeq2

10 months ago jovel_juan ▴ 30

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978

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edgeR contrasts limma design model.matrix

16 months ago mohammedtoufiq91 ▴ 10

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657

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limma F-statistic contrasts

updated 17 months ago by Gordon Smyth 50k • written 17 months ago by jeltje.van.baren • 0

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3.3k

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DifferentialExpression contrasts interaction DESeq2

written 24 months ago by Nicole ▴ 10

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1.3k

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contrasts limma voom

updated 2.1 years ago by Gordon Smyth 50k • written 2.1 years ago by S T ▴ 90

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713

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DESeq2 contrasts

updated 2.2 years ago by Michael Love 41k • written 2.2 years ago by Mir • 0

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958

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topTable voom contrasts

2.7 years ago • updated 2.6 years ago James • 0

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996

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DESeq2 phyloseq contrasts

updated 2.7 years ago by Kevin Blighe ★ 3.9k • written 2.7 years ago by Mir • 0

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2.0k

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DifferentialExpression DESeq2 contrasts

2.9 years ago Jane ▴ 10

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1.2k

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edger limma contrasts DGE

updated 4.4 years ago by James W. MacDonald 65k • written 4.4 years ago by s.connell • 0

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1.0k

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deseq2 contrasts reference level

updated 4.4 years ago by Michael Love 41k • written 4.4 years ago by ananda2 • 0

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674

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edger contrasts model.matrix circadian

4.4 years ago ingerslev • 0

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1.1k

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DESeq2 RNA-Seq Multifactorial Design GLM Contrasts

updated 4.4 years ago by Michael Love 41k • written 4.4 years ago by ananda2 • 0

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1.4k

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deseq2 deseq differential expression contrasts

updated 4.4 years ago by Michael Love 41k • written 4.4 years ago by Keith Hughitt ▴ 180

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972

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limma nanostring contrasts

updated 4.6 years ago by Gordon Smyth 50k • written 4.6 years ago by uridavid.akavia • 0

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672

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deseq2 multiple factor design contrasts experimental design

updated 4.9 years ago by Michael Love 41k • written 4.9 years ago by kehoe • 0

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1.4k

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edger limma design contrasts batch

updated 5.1 years ago by Aaron Lun ★ 28k • written 5.1 years ago by Pietro ▴ 40

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1.1k

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edger contrasts

updated 5.2 years ago by Gordon Smyth 50k • written 5.2 years ago by Maiv • 0

20 results • Page 1 of 1

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Comment: minfi::read.metharray.exp by clacarion • 0

I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…

Comment: minfi::read.metharray.exp by clacarion • 0

Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…

Answer: List of Deprecated Packages for Bioc3.19 by shepherl 3.8k

singleCellTK has been fixed and will remain in Bioconductor

Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10

Yes, I'm working only with genes from terpenoids pathway (14 genes), so I can't use enrichGO? Can you recommend a package or something like…

Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10

Your awnser at Cannabis orgDb solve my problems using enrichGO by far. I'm underdegree biotechnology student, and I learning bioinformatic…

Votes

Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)

Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.

Answer: minfi::read.metharray.exp

Comment: Trying to use enrichGO

Answer: Cannabis OrgDb

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