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CopywriteR
•
reset
0
votes
7
replies
2.0k
views
Multithreading CopywriteR on SLURM cluster
copywriter
slurm
openMPI
updated 8.2 years ago by
t.kuilman
▴ 170 • written 8.2 years ago by
smcnulty
• 0
2
votes
9
replies
2.4k
views
Calling amplifications and deletions from CopywriteR output
CopywriteR
copy number
updated 8.2 years ago by
t.kuilman
▴ 170 • written 8.2 years ago by
smcnulty
• 0
1
vote
2
replies
1.2k
views
Copywriter output looks strange
copywriter
8.2 years ago
MatthewGField
▴ 10
1
vote
2
replies
1.7k
views
BiocParallel and CopywriteR Error
bioconductor
biocparallel
copywriter
updated 6.8 years ago by
Martin Morgan
25k • written 6.8 years ago by
genomic8328
▴ 10
3
votes
12
replies
2.0k
views
S4Vectors and subectHits error
s4vectors
copywriter
updated 6.0 years ago by
Michael Lawrence
★ 11k • written 6.0 years ago by
TriS
▴ 200
0
votes
3
replies
1.4k
views
CopywriteR error: "Error in .Method"
CopywriteR
7.8 years ago
Tom
▴ 10
0
votes
1
reply
1.5k
views
CopywriteR: CNV calling on normals samples / gaps in chromosomes
copynumber
cnvtools
cnv
copywriteR
updated 7.7 years ago by
t.kuilman
▴ 170 • written 7.7 years ago by
ahinsahr11
• 0
0
votes
1
reply
1.1k
views
Problems with CopywriteR
copywriter
updated 7.1 years ago by
t.kuilman
▴ 170 • written 7.1 years ago by
filipzembol
• 0
0
votes
1
reply
886
views
CopywriteR - low coverage-regions display very low numbers
copywriter
copynumber
updated 5.6 years ago by
t.kuilman
▴ 170 • written 5.6 years ago by
magdaaverte
• 0
2
votes
4
replies
869
views
CopywriteR job runs out of memory
copywriter
cnv
updated 4.0 years ago by
oscarkrijgsman
▴ 20 • written 4.0 years ago by
Ram
▴ 190
2
votes
1
reply
1.2k
views
Copyhelper: Preprocession of mappability
CopywriteR
updated 8.3 years ago by
t.kuilman
▴ 170 • written 8.3 years ago by
Felix
• 0
0
votes
1
reply
1.3k
views
CopywriteR - choosing optimal bin size for targeted sequencing panel
copywriter
bin size
targeted sequencing
updated 8.2 years ago by
t.kuilman
▴ 170 • written 8.2 years ago by
sshung
• 0
2
votes
4
replies
2.3k
views
Visualizing CopywriteR's segmentation output in IGV
copywriter
dnacopy
updated 8.1 years ago by
t.kuilman
▴ 170 • written 8.1 years ago by
jcarter
• 0
3
votes
3
replies
3.8k
views
Preparing CopywriteR output for GISTIC 2.0 analysis
copywriter
updated 8.1 years ago by
t.kuilman
▴ 170 • written 8.1 years ago by
jcarter
• 0
1
vote
3
replies
1.4k
views
CopywriteR can't finish calculating copy number
copywriter
bam
updated 7.9 years ago by
t.kuilman
▴ 170 • written 7.9 years ago by
thestaroceanster
• 0
0
votes
1
reply
528
views
CopywriteR output
CopywriteR
updated 13 days ago by
fer_talavera
• 0 • written 2.5 years ago by
Joshua
• 0
0
votes
2
replies
261
views
Error in if (nrow(peaks) > 0) { : argument is of length zero Calls: CopywriteR ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous> Execution h…
CopywriteR
CopyhelpeR
18 days ago • updated 13 days ago
fer_talavera
• 0
17 results • Page
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Comment: Finding DEGs by using edgeR
by
Gordon Smyth
50k
Filtering (removing lowly expressed genes) is separate to normalization. It isn't clear why not subsetting would cause any difficulty. It …
Comment: How to make DGEList and design matrix by edgeR package
by
prity6459
• 0
Thank you for your suggestion. Yes, I have made DGEList and design matrix in my script. But I was not entirely confident while making thos…
Comment: Finding DEGs by using edgeR
by
prity6459
• 0
Hello Gordon, Thanks for your response. By normalization, I meant that I have already removed lowly expressed genes from my count matrix. …
Answer: FilterByExpr low counts with small sample size
by
Gordon Smyth
50k
It doesn't seem to me that there is necessarily any problem with the analysis. You say that there are "too many low-reads" but actually th…
Answer: How to make DGEList and design matrix by edgeR package
by
Gordon Smyth
50k
Your question is curious because you showed code that made a DGEList and design matrix in your previous post just 15 hours ago. Please h…
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