Bioconductor CopywriteR

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257

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CopywriteR CopyhelpeR

17 days ago • updated 12 days ago fer_talavera • 0

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526

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CopywriteR

updated 12 days ago by fer_talavera • 0 • written 2.5 years ago by Joshua • 0

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869

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copywriter cnv

updated 4.0 years ago by oscarkrijgsman ▴ 20 • written 4.0 years ago by Ram ▴ 190

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885

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copywriter copynumber

updated 5.6 years ago by t.kuilman ▴ 170 • written 5.6 years ago by magdaaverte • 0

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2.0k

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s4vectors copywriter

updated 6.0 years ago by Michael Lawrence ★ 11k • written 6.0 years ago by TriS ▴ 200

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1.7k

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bioconductor biocparallel copywriter

updated 6.8 years ago by Martin Morgan 25k • written 6.8 years ago by genomic8328 ▴ 10

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1.1k

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copywriter

updated 7.1 years ago by t.kuilman ▴ 170 • written 7.1 years ago by filipzembol • 0

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1.5k

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copynumber cnvtools cnv copywriteR

updated 7.7 years ago by t.kuilman ▴ 170 • written 7.7 years ago by ahinsahr11 • 0

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1.4k

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CopywriteR

7.8 years ago Tom ▴ 10

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1.4k

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copywriter bam

updated 7.9 years ago by t.kuilman ▴ 170 • written 7.9 years ago by thestaroceanster • 0

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3.8k

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copywriter

updated 8.1 years ago by t.kuilman ▴ 170 • written 8.1 years ago by jcarter • 0

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2.3k

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copywriter dnacopy

updated 8.1 years ago by t.kuilman ▴ 170 • written 8.1 years ago by jcarter • 0

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1.2k

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copywriter

8.2 years ago MatthewGField ▴ 10

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2.4k

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CopywriteR copy number

updated 8.2 years ago by t.kuilman ▴ 170 • written 8.2 years ago by smcnulty • 0

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2.0k

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copywriter slurm openMPI

updated 8.2 years ago by t.kuilman ▴ 170 • written 8.2 years ago by smcnulty • 0

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1.3k

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copywriter bin size targeted sequencing

updated 8.2 years ago by t.kuilman ▴ 170 • written 8.2 years ago by sshung • 0

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1.2k

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CopywriteR

updated 8.3 years ago by t.kuilman ▴ 170 • written 8.3 years ago by Felix • 0

17 results • Page 1 of 1

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Comment: Multi factor design edgeR/Deseq2 by Elizabeth • 0

Sorry I realise this thread is ancient, but I'm wondering why it's ok to remove the last column from the design matrix? Also, why this desi…

Comment: DESeq2 setting significant p-value by Michael Love 41k

It does not resort. Also the dataset and results will have the same row names from object creation throughout the analysis.

Comment: Input Question for deseq.r by ATpoint ★ 4.0k

It is unclear what "deseq.r" is. It is not part of DESeq2, and almost certainly no part of RSeqAn. Please add details, and keep in mind tha…

Answer: DESEQ2 output gives multiple groups when only 2 groups are present by ATpoint ★ 4.0k

In the first PCA plot there is almost certainly some hidden character like whitespaces in the column from colData that encodes this group. …

Answer: A ComBat-seq issue: the covariates are confounded by ATpoint ★ 4.0k

```r > table(batch, group) group batch egfr gfp her2 1 0 12 5 2 6 6 0 ``` All of her2 is batch2, all of egfr i…

Votes

Using GRanges and IRanges to simply get all chromosome data

A: Using GRanges and IRanges to simply get all chromosome data

Comment: Reading huge bismark coverage files using bbseq::read.bismark

Answer: Reading huge bismark coverage files using bbseq::read.bismark

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