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CopywriteR
•
reset
0
votes
0
replies
469
views
CopywriteR output
CopywriteR
2.4 years ago
Joshua
• 0
2
votes
4
replies
843
views
CopywriteR job runs out of memory
copywriter
cnv
updated 3.9 years ago by
oscarkrijgsman
▴ 20 • written 3.9 years ago by
Ram
▴ 190
0
votes
1
reply
865
views
CopywriteR - low coverage-regions display very low numbers
copywriter
copynumber
updated 5.5 years ago by
t.kuilman
▴ 170 • written 5.5 years ago by
magdaaverte
• 0
3
votes
12
replies
2.0k
views
S4Vectors and subectHits error
s4vectors
copywriter
updated 6.0 years ago by
Michael Lawrence
★ 11k • written 6.0 years ago by
TriS
▴ 200
1
vote
2
replies
1.7k
views
BiocParallel and CopywriteR Error
bioconductor
biocparallel
copywriter
updated 6.7 years ago by
Martin Morgan
25k • written 6.7 years ago by
genomic8328
▴ 10
0
votes
1
reply
1.0k
views
Problems with CopywriteR
copywriter
updated 7.0 years ago by
t.kuilman
▴ 170 • written 7.0 years ago by
filipzembol
• 0
0
votes
1
reply
1.5k
views
CopywriteR: CNV calling on normals samples / gaps in chromosomes
copynumber
cnvtools
cnv
copywriteR
updated 7.7 years ago by
t.kuilman
▴ 170 • written 7.7 years ago by
ahinsahr11
• 0
0
votes
3
replies
1.3k
views
CopywriteR error: "Error in .Method"
CopywriteR
7.7 years ago
Tom
▴ 10
1
vote
3
replies
1.3k
views
CopywriteR can't finish calculating copy number
copywriter
bam
updated 7.8 years ago by
t.kuilman
▴ 170 • written 7.8 years ago by
thestaroceanster
• 0
3
votes
3
replies
3.7k
views
Preparing CopywriteR output for GISTIC 2.0 analysis
copywriter
updated 8.1 years ago by
t.kuilman
▴ 170 • written 8.1 years ago by
jcarter
• 0
2
votes
4
replies
2.3k
views
Visualizing CopywriteR's segmentation output in IGV
copywriter
dnacopy
updated 8.1 years ago by
t.kuilman
▴ 170 • written 8.1 years ago by
jcarter
• 0
1
vote
2
replies
1.2k
views
Copywriter output looks strange
copywriter
8.1 years ago
MatthewGField
▴ 10
2
votes
9
replies
2.4k
views
Calling amplifications and deletions from CopywriteR output
CopywriteR
copy number
updated 8.1 years ago by
t.kuilman
▴ 170 • written 8.1 years ago by
smcnulty
• 0
0
votes
7
replies
2.0k
views
Multithreading CopywriteR on SLURM cluster
copywriter
slurm
openMPI
updated 8.1 years ago by
t.kuilman
▴ 170 • written 8.1 years ago by
smcnulty
• 0
0
votes
1
reply
1.3k
views
CopywriteR - choosing optimal bin size for targeted sequencing panel
copywriter
bin size
targeted sequencing
updated 8.1 years ago by
t.kuilman
▴ 170 • written 8.1 years ago by
sshung
• 0
2
votes
1
reply
1.2k
views
Copyhelper: Preprocession of mappability
CopywriteR
updated 8.2 years ago by
t.kuilman
▴ 170 • written 8.2 years ago by
Felix
• 0
16 results • Page
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Recent ...
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Comment: limma models out of memory issue on Slurm HPC
by
Jitendra
▴ 10
thanks Gordon, but our methylation epic array input file is quite big and we can't read it in R by just using laptop memory so we need to …
Comment: Doing comparison of RNA-seq data using EdgeR
by
Michael Love
41k
Just to clarify, when I originally posted the title and tags had listed "DESeq2" and then the post was changed after my answer was added. …
Comment: fgsea fork
by
shepherl
3.8k
Not quite sure what you mean by clone or fork the package on latest version of R. Bioconductor runs all builds on the latest version of R.…
Answer: Doing comparison of RNA-seq data using EdgeR
by
Gordon Smyth
50k
It's pretty easy to do a two-group comparison using edgeR, but you seem to be stuck at the initial stage of reading data into R. If you exp…
Answer: Differing results from plotMDS and PCAtools
by
Gordon Smyth
50k
The reason why the two plots are different is that the first plot is a PCA plot while the second is a biplot. Quite different plots. The P…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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