Showing : Correlation • reset
0
votes
1
reply
892
views
Human genes correlation to Bacterial genes
correlation pearsoncorrelation rna-seq differential gene expression
updated 4 months ago by ★ 4.0k • written 6.0 years ago by • 0
0
votes
1
reply
850
views
using WGCNA, positive or negative corrlation between genes composing modules.
correlation wgcna network
updated 4 months ago by • 0 • written 16 months ago by • 0
0
votes
1
reply
977
views
WGCNA correlation sign differences between eigen genes/ hub genes and clinical traits
hub correlation eigen WGCNA
updated 4 months ago by • 0 • written 2.4 years ago by • 0
0
votes
1
reply
797
views
Correlation between two different datasets: between results of RNAseq and absence/presence of Type3 Secretion System
RNASeq Correlation DESeq2
updated 20 months ago by 41k • written 20 months ago by • 0
1
vote
1
reply
995
views
spearman correlation
correlation sperarman
updated 2.5 years ago by ★ 4.0k • written 2.5 years ago by • 0
15
votes
17
replies
23k
views
WGCNA: What is `soft thresholding`?
wgcna network analysis network correlation coexpression
updated 3.4 years ago by ▴ 730 • written 7.6 years ago by ▴ 40
4
votes
1
reply
1.5k
views
Best practice for correlating scRNA seq to bulkRNA seq data
seurat edgeR spearman correlation scRNAseq
updated 4.0 years ago by ★ 28k • written 4.0 years ago by ▴ 10
0
votes
2
replies
896
views
Correlation plot how to improve?
plot correlation
4.5 years ago annkolman78 • 0
4
votes
7
replies
1.3k
views
Are spurious correlations possible in correlating two DESeq2 foldchanges computed using the same reference sample group?
deseq2 correlation
5.4 years ago Cornwell, Adam ▴ 110
0
votes
3
replies
1.2k
views
Coverage profile comparison
Targeted sequencing correlation coverage euclid clustering
5.5 years ago faramer86 • 0
0
votes
1
reply
997
views
How can I do a correlation heatmap between two groups of matrices (metabolomic and transcriptomic data)
correlation
5.8 years ago adriana.gallego.02 ▴ 20
0
votes
1
reply
1.1k
views
Differential Coexpression Analysis
differential analysis differential gene expression coexpression correlation
updated 6.1 years ago by ★ 3.0k • written 6.1 years ago by ▴ 20
2
votes
1
reply
836
views
Is there any prerequisites for taking correlation in genomic data?
correlation
updated 6.2 years ago by ▴ 420 • written 6.2 years ago by ▴ 20
0
votes
6
replies
1.5k
views
expression correlation on an ExpressionSet
ExpressionSet caseControl Correlation Plot
updated 6.9 years ago by • 0 • written 7.2 years ago by ▴ 10
1
vote
2
replies
1.9k
views
Diffbind: how to include all the samples in the heatmap while using the contrast
diffbind heatmap correlation
updated 7.1 years ago by ★ 5.1k • written 7.1 years ago by • 0
7
votes
3
replies
3.1k
views
plotting correlation between samples
correlation
updated 7.1 years ago by ★ 28k • written 7.1 years ago by ▴ 10
4
votes
9
replies
3.3k
views
WGCNA | pickSoftThreshold.fromSimilarity not working for input similarity matrix
WGCNA similarity correlation bioconductor rnaseq
updated 7.2 years ago by ★ 3.0k • written 7.2 years ago by ▴ 40
4
votes
4
replies
1.4k
views
Correlation analysis taking into account multiple correlations
edger rna-seq correlation
updated 7.6 years ago by ▴ 270 • written 7.6 years ago by ▴ 10
2
votes
7
replies
4.6k
views
How to create "trait data" file for WGCNA
wgcna coexpression correlation microarray
updated 8.2 years ago by ★ 3.0k • written 8.2 years ago by ▴ 20
2
votes
4
replies
2.2k
views
Can DESeq correlate genes expression patterns with a numerical sample factor?
deseq2 correlation deseq linear
updated 8.7 years ago by ★ 7.9k • written 8.7 years ago by • 0
3
votes
3
replies
1.4k
views
Correlation/clustering of numeric (continuous) and categorical values
correlation
updated 9.0 years ago by 21k • written 9.0 years ago by ★ 2.0k
21 results • Page 1 of 1
Recent ...
Replies
Comment: FilterByExpr low counts with small sample size by Gordon Smyth 50k
As always, it helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR prior to `voom`? Are you star…
Comment: Batch correction and repeated measures by Gordon Smyth 50k
In your code, it was clear that `expr.mat` was a matrix rather than a DGEList, so it has to be a count matrix. If you have a DGEList object…
Comment: Methylation Analysis experiment design using Limma by Gordon Smyth 50k
I don't analyse methylation arrays so cannot advise on specific limma settings for that type of data. Please follow the advice of the methy…
Comment: Light difference when using coef vs omit a group when compare 3 groups. by Chris • 0
Hi Gordon, thank you so much for further guidance! I discussed this issue with doctor know about Alzheimer and they don't expect significan…
Comment: Single-Cell Data Simulation from Bulk RNA-seq by wichaidi • 0
Hi - I am wondering what you decided to do. I am currently in a similar condition where I need to create a toy scRNAseq data from bulk.
Votes
Answer: How many of my genes from my gene list are in each KEGG pathway?
Comment: Light difference when using coef vs omit a group when compare 3 groups.
DESeq2 variance transformation error and plot dispersion Estimate
A: DESeq2 variance transformation error and plot dispersion Estimate
ensembl to hgnc symbols creates duplicates
Awards • All
Popular Question to paria.alipour • 0
Popular Question to Eman • 0
Popular Question to James W. MacDonald 65k
Scholar to nhaus ▴ 30
Popular Question to shepherl 3.8k
Locations • All
France, 10 minutes ago
United States, 33 minutes ago
United States, 38 minutes ago
United States, 47 minutes ago
WEHI, Melbourne, Australia, 1 hour ago
Traffic: 492 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6