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Cuffdiff
•
reset
5
votes
18
replies
3.1k
views
Incongruencies between DEXSeq and BitSeq/Cuffdiff
dexseq
bitseq
cuffdiff
Differential exon usage
isoforms
8.9 years ago • updated 8.8 years ago
elle
▴ 10
2
votes
4
replies
2.1k
views
Error in SpliceR and GTF file issue
SpliceR
Cuffdiff
updated 8.6 years ago by
deppt002
• 0 • written 8.8 years ago by
mfahim
• 0
2
votes
2
replies
1.7k
views
Help with cummeRbund
cummeRbund
Script
analysis
RNAseq
cuffdiff
updated 9.0 years ago by
andrew.j.skelton73
▴ 370 • written 9.0 years ago by
mfahim
• 0
1
vote
3
replies
3.3k
views
HTSeq-count on several gff3/gtf files for use in DESeq2
htseqtools
deseq2
counts
cuffdiff
8.2 years ago
Jon Bråte
▴ 250
1
vote
8
replies
2.9k
views
How to change XLOC ID to Gene symbol from Cuffdiff ?
RNA-seq / XLOC
cuffdiff
updated 2.2 years ago by
Lan
• 0 • written 3.9 years ago by
mg.mahabad1365
• 0
0
votes
1
reply
323
views
cuffdiff-CummeRbund error
cummeRbund
cufflink
cuffdiff
updated 8 months ago by
James W. MacDonald
65k • written 8 months ago by
sumitra
• 0
0
votes
2
replies
1.6k
views
How many 'expressed genes' do I have in my dataset?
deseq2
cuffdiff
updated 8.9 years ago by
Michael Love
41k • written 8.9 years ago by
a.de-giorgio12
• 0
0
votes
1
reply
1.2k
views
KEGG with pathview using CuffDiff data
kegg
readcufflinks
cuffdiff
cuff
updated 6.4 years ago by
thokall
▴ 160 • written 6.4 years ago by
pierre.biojoux
• 0
0
votes
2
replies
1.5k
views
GAGE from Cuffdiff workflow: Error in names(cuff.fc) = gnames : attempt to set an attribute on NULL
GAGE
Cuffdiff
gene names
updated 8.4 years ago by
Luo Weijun
★ 1.6k • written 8.4 years ago by
user31888
▴ 30
0
votes
2
replies
1.2k
views
Unable to load sqlite file generated by Cuffdiff
cuffdiff
sqlite
6.4 years ago
handgabriel
• 0
0
votes
5
replies
1.4k
views
WGCNA Co-expression network analysis on cuffdiff output
WGCNA
cuffdiff
5.6 years ago
sbbinfo90
• 0
0
votes
2
replies
1.3k
views
Diffrential expression analysis of human vs. mouse
deseq2
cuffdiff
differential gene expression
8.8 years ago
Assa Yeroslaviz
★ 1.5k
12 results • Page
1 of 1
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Answer: Cannabis and KEGGgraph
by
deeenes
▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches
by
Gordon Smyth
50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param
by
russ.bainer
▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Chris
• 0
Hi Robert, If I don't want to use all pathway in c2 gene set but only a few pathways of interested, how can I do that? So we try to get a …
Comment: How to retrieve detailed regression results from deseq2
by
Weiqian
▴ 10
Hi Michael, thanks for the answer! I'll have a look : )
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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