Bioconductor Cuffdiff

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4.0k

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dexseq bitseq cuffdiff Differential exon usage isoforms

9.9 years ago • updated 9.8 years ago elle ▴ 10

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2.3k

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SpliceR Cuffdiff

updated 9.6 years ago by deppt002 • 0 • written 9.9 years ago by mfahim • 0

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2.0k

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cummeRbund Script analysis RNAseq cuffdiff

updated 10.0 years ago by andrew.j.skelton73 ▴ 370 • written 10.0 years ago by mfahim • 0

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4.0k

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htseqtools deseq2 counts cuffdiff

9.2 years ago Jon Bråte ▴ 260

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3.8k

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RNA-seq / XLOC cuffdiff

updated 3.3 years ago by Lan • 0 • written 5.0 years ago by mg.mahabad1365 • 0

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546

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cummeRbund cufflink cuffdiff

updated 21 months ago by James W. MacDonald 68k • written 21 months ago by sumitra • 0

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1.9k

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deseq2 cuffdiff

updated 9.9 years ago by Michael Love 43k • written 9.9 years ago by a.de-giorgio12 • 0

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1.5k

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kegg readcufflinks cuffdiff cuff

updated 7.4 years ago by thokall ▴ 160 • written 7.5 years ago by pierre.biojoux • 0

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1.8k

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GAGE Cuffdiff gene names

updated 9.4 years ago by Luo Weijun ★ 1.6k • written 9.4 years ago by user31888 ▴ 30

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cuffdiff sqlite

7.4 years ago handgabriel • 0

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1.9k

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WGCNA cuffdiff

6.6 years ago sbbinfo90 • 0

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1.7k

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deseq2 cuffdiff differential gene expression

9.8 years ago Assa Yeroslaviz ★ 1.5k

12 results • Page 1 of 1

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Comment: Module membership vs gene significance result and Modules-trait relationships re by Vinaya • 0

Hi. I am having the same issue, and haven't found a solution still.

Comment: Feature Counts - potential bug with outfile.jcounts by Tom • 0

[Penistone Locksmith][1] I think that would be a great idea; a novel junction to annotated junction proximity output column. So if the nove…

Comment: Filtering after DESeq by caroline.zanchi • 0

I am going to try this right now, thanks !

Comment: Bioconductor 3.20 Release Schedule by randyprice13102000 • 0

This offers much info https://bioconductor.org/checkResults/release/bioc-LATEST/

Comment: Filtering after DESeq by ATpoint ★ 4.8k

The problem is that your prefilter is not group-aware so the behaviour of seeing these sorts of outliers is expected. This is why I always …

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A: Minfi issue: return code from pthread_create() is 22

Comment: Filtering after DESeq

Answer: DiffBind; Error: No sites have activity greater than filter value

DiffBind; Error: No sites have activity greater than filter value

remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline

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