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CyTOF
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705
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flow cytometry differential expression through time
cytofWorkflow
cytof
diffcyt
3.3 years ago
achaillon
• 0
0
votes
0
replies
1.4k
views
Error from FlowSom to Cytofast
Cytofast
FlowSom
CyTOF
fcs files
3.5 years ago
domenico.somma
• 0
1
vote
5
replies
1.0k
views
CyTOF Differential Abundance Analysis using DESeq2
deseq2
mass cytometry
CyTOF
updated 3.5 years ago by
Michael Love
41k • written 3.5 years ago by
mikhael.manurung
▴ 270
0
votes
0
replies
621
views
Concatenating different runs from the same pool of barcoded CyTOF samples
batch effect
cytof
4.1 years ago
mikhael.manurung
▴ 270
1
vote
6
replies
1.6k
views
Re: Cydar. Can I Normalize CyTOF data with just one FCS file/batch and if so, which normalization mode is recommended?
Cydar
CyTOF
normalization
updated 4.6 years ago by
Aaron Lun
★ 28k • written 4.6 years ago by
ghogg
• 0
2
votes
4
replies
906
views
Cydar's countCells tolerance parameter for arcsinh-transformed data
cydar
CyTOF
updated 5.2 years ago by
Aaron Lun
★ 28k • written 5.2 years ago by
mikhael.manurung
▴ 270
2
votes
2
replies
1.3k
views
Cytofkit - Trouble with writing files after performing the analysis
cytofkit
cytof
write.csv
output
updated 7.5 years ago by
chen_hao
▴ 30 • written 7.5 years ago by
cjackson13
• 0
1
vote
2
replies
2.7k
views
Errors when reading CyToF flowSet into flowCore
flowCore
flowcore
CyToF
Rtsne
updated 8.7 years ago by
Jiang, Mike
★ 1.3k • written 8.7 years ago by
clevy
▴ 10
8 results • Page
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Comment: Methylation Analysis experiment design using Limma
by
hortense96
• 0
Thank you very much for your reply and your suggestion, as I'm having a bit of trouble finding information on how to manage this part of th…
Comment: Limma design with continuous and categorical covariates
by
hortense96
• 0
Hello, I'm trying to do a differential methylation analysis with the Limma package and was wondering if you had any suggestions on how to …
Answer: minfi::read.metharray.exp
by
Basti
▴ 770
Could you show `list.files("~/Users/clarachretienneau/Desktop/clock epigenetic/PJ1209132_ScanData")` ? There may be a problem related to th…
Comment: DESeq2 - dispersion estimation when there is none
by
WardDeb
• 0
Thank you for the pointers, I'll revert back again to the method section of the paper. As for the negative relationship of the estimated di…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function
by
Gayatri
• 0
Hello James, How to generate the db? By running the makeOrgPackageFromNCBI() command? I have tried doing that, first by just deleting the …
Votes
Answer: OrgDb for maize
Answer: DESeq2 - dispersion estimation when there is none
Comment: Cannabis and KEGGgraph
Comment: Cannabis and KEGGgraph
Answer: Cannabis and KEGGgraph
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