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DADA2
•
reset
0
votes
0
replies
285
views
is Dada2 biased toward a particular sequence ?
virology
dada2
amplican
Sequencing
RNASeq
5 months ago
Sara
• 0
0
votes
0
replies
286
views
Using DADA2 for finding viral sequence variants
VariantDetection
dada2
RNASeq
5 months ago
Sara
• 0
2
votes
2
replies
396
views
Broken UNITE 9.0 link (General FASTA Release)
dada2
UNITE
7 months ago
GlycineMax
• 0
0
votes
14
replies
1.9k
views
Trouble downloading dada2
dada
dada2
13 months ago
elliottchon97
• 0
0
votes
3
replies
979
views
Problem with multiple sequence alignment using AlignSeqs
R
dada2
DECIPHER
updated 15 months ago by
Erik Wright
▴ 150 • written 15 months ago by
Nelli
• 0
0
votes
2
replies
777
views
Microbiome 16S amplicon analysis in dada2
bioinformatics
DADA2
19 months ago
anasjamshed1994
• 0
1
vote
3
replies
1.1k
views
Assign taxonomy is not working
Assigntaxonomy
dada2
updated 24 months ago by
shepherl
3.8k • written 24 months ago by
safiq713
• 0
27
votes
13
replies
16k
views
problems about installation of package ‘Rhtslib’, ‘Rsamtools’ ,‘GenomicAlignments’ , ‘ShortRead’ on macOS Big Sur using R 4.1.0
dada2
updated 13 months ago by
Yoon Young
• 0 • written 2.8 years ago by
lh290
▴ 60
0
votes
4
replies
1.7k
views
Cannot install Phyloseq and dada2
GenomeInfoDbData
phyloseq
dada2
2.2 years ago
ymtan
• 0
0
votes
0
replies
739
views
Construct a phyloseq object directly from the dada2 outputs
phyloseq
dada2
2.6 years ago
Manijeh
• 0
0
votes
0
replies
947
views
dada2 (derepFastaq function) 'Calloc' could not allocate memory (1000000 of 16 bytes) in r version 4.1.0
dada2
2.6 years ago
Yoan
• 0
0
votes
5
replies
2.1k
views
Do DECIPHER:IdTaxa / dada2::assignTaxonomy work with ambigious reference training set?
decipher
dada2
updated 2.8 years ago by
fabian.roger08
▴ 10 • written 4.1 years ago by
fabian.roger
• 0
0
votes
1
reply
732
views
FDR Correction
dada2
Metagenomics
DESeq2
updated 2.8 years ago by
Michael Love
41k • written 2.8 years ago by
GlycineMax
• 0
4
votes
8
replies
3.7k
views
Is there a different way to generate a tree for phyloseq object
r
dada2
Bioconductor
updated 2.9 years ago by
Axel Klenk
▴ 990 • written 2.9 years ago by
mschmidt
▴ 10
0
votes
0
replies
928
views
DECIPHER Package on dada2 -Implementing Silva_metaxa2 training set from qza file into a fastq.gz/.Rdata
DECIPHER
dada2
3.0 years ago
anrongloh
• 0
1
vote
1
reply
3.5k
views
Setting up bioconductor on a Linux server using conda
dada2
conda
phyloseq
updated 3.0 years ago by
James W. MacDonald
65k • written 3.0 years ago by
Daniel
• 0
0
votes
0
replies
1.0k
views
from raw reads ASV table - dada2 - small number of merged pairs
dada2
515F - 806Rd
4.0 years ago
beginner87
• 0
0
votes
1
reply
1.9k
views
Error: record does not start with '@'
DADA2
.fq
updated 5.2 years ago by
James W. MacDonald
65k • written 5.2 years ago by
mafusa20
• 0
0
votes
1
reply
971
views
Cannot Update Biostrings to Latest Version
dada2
biostrings
updated 5.7 years ago by
James W. MacDonald
65k • written 5.7 years ago by
gradypierroz
• 0
4
votes
4
replies
2.4k
views
Using DADA2 output for DESeq2
deseq2
dada2
updated 6.1 years ago by
benjamin.j.callahan
▴ 50 • written 6.1 years ago by
blastzone.heimerdinger
▴ 20
0
votes
1
reply
1.7k
views
dada2 unavailable for R 3.4.1
bioconductor
R
dada2
updated 6.6 years ago by
daniel.vantwisk
▴ 50 • written 6.6 years ago by
rggriggs
• 0
1
vote
7
replies
17k
views
Dada2 and GenomeInfoDbData installation
dada2
GenomeInfoDbData
updated 6.7 years ago by
jiangjing_ing
• 0 • written 6.8 years ago by
navlern
• 0
22 results • Page
1 of 1
Recent ...
Replies
Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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