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DADA2
•
reset
0
votes
0
replies
288
views
is Dada2 biased toward a particular sequence ?
virology
dada2
amplican
Sequencing
RNASeq
5 months ago
Sara
• 0
0
votes
0
replies
287
views
Using DADA2 for finding viral sequence variants
VariantDetection
dada2
RNASeq
5 months ago
Sara
• 0
2
votes
2
replies
398
views
Broken UNITE 9.0 link (General FASTA Release)
dada2
UNITE
7 months ago
GlycineMax
• 0
0
votes
14
replies
1.9k
views
Trouble downloading dada2
dada
dada2
13 months ago
elliottchon97
• 0
0
votes
3
replies
983
views
Problem with multiple sequence alignment using AlignSeqs
R
dada2
DECIPHER
updated 15 months ago by
Erik Wright
▴ 150 • written 15 months ago by
Nelli
• 0
0
votes
2
replies
779
views
Microbiome 16S amplicon analysis in dada2
bioinformatics
DADA2
19 months ago
anasjamshed1994
• 0
1
vote
3
replies
1.1k
views
Assign taxonomy is not working
Assigntaxonomy
dada2
updated 24 months ago by
shepherl
3.8k • written 24 months ago by
safiq713
• 0
27
votes
13
replies
16k
views
problems about installation of package ‘Rhtslib’, ‘Rsamtools’ ,‘GenomicAlignments’ , ‘ShortRead’ on macOS Big Sur using R 4.1.0
dada2
updated 14 months ago by
Yoon Young
• 0 • written 2.8 years ago by
lh290
▴ 60
0
votes
4
replies
1.7k
views
Cannot install Phyloseq and dada2
GenomeInfoDbData
phyloseq
dada2
2.2 years ago
ymtan
• 0
0
votes
0
replies
740
views
Construct a phyloseq object directly from the dada2 outputs
phyloseq
dada2
2.6 years ago
Manijeh
• 0
0
votes
0
replies
948
views
dada2 (derepFastaq function) 'Calloc' could not allocate memory (1000000 of 16 bytes) in r version 4.1.0
dada2
2.6 years ago
Yoan
• 0
0
votes
5
replies
2.1k
views
Do DECIPHER:IdTaxa / dada2::assignTaxonomy work with ambigious reference training set?
decipher
dada2
updated 2.8 years ago by
fabian.roger08
▴ 10 • written 4.1 years ago by
fabian.roger
• 0
0
votes
1
reply
733
views
FDR Correction
dada2
Metagenomics
DESeq2
updated 2.8 years ago by
Michael Love
41k • written 2.8 years ago by
GlycineMax
• 0
4
votes
8
replies
3.7k
views
Is there a different way to generate a tree for phyloseq object
r
dada2
Bioconductor
updated 2.9 years ago by
Axel Klenk
▴ 990 • written 2.9 years ago by
mschmidt
▴ 10
0
votes
0
replies
929
views
DECIPHER Package on dada2 -Implementing Silva_metaxa2 training set from qza file into a fastq.gz/.Rdata
DECIPHER
dada2
3.0 years ago
anrongloh
• 0
1
vote
1
reply
3.5k
views
Setting up bioconductor on a Linux server using conda
dada2
conda
phyloseq
updated 3.0 years ago by
James W. MacDonald
65k • written 3.0 years ago by
Daniel
• 0
0
votes
0
replies
1.0k
views
from raw reads ASV table - dada2 - small number of merged pairs
dada2
515F - 806Rd
4.0 years ago
beginner87
• 0
0
votes
1
reply
1.9k
views
Error: record does not start with '@'
DADA2
.fq
updated 5.2 years ago by
James W. MacDonald
65k • written 5.2 years ago by
mafusa20
• 0
0
votes
1
reply
972
views
Cannot Update Biostrings to Latest Version
dada2
biostrings
updated 5.7 years ago by
James W. MacDonald
65k • written 5.7 years ago by
gradypierroz
• 0
4
votes
4
replies
2.4k
views
Using DADA2 output for DESeq2
deseq2
dada2
updated 6.1 years ago by
benjamin.j.callahan
▴ 50 • written 6.1 years ago by
blastzone.heimerdinger
▴ 20
0
votes
1
reply
1.7k
views
dada2 unavailable for R 3.4.1
bioconductor
R
dada2
updated 6.6 years ago by
daniel.vantwisk
▴ 50 • written 6.6 years ago by
rggriggs
• 0
1
vote
7
replies
17k
views
Dada2 and GenomeInfoDbData installation
dada2
GenomeInfoDbData
updated 6.7 years ago by
jiangjing_ing
• 0 • written 6.8 years ago by
navlern
• 0
22 results • Page
1 of 1
Recent ...
Replies
Comment: Doing comparison of RNA-seq data using EdgeR
by
Michael Love
41k
Just to clarify, when I originally posted the title and tags had listed "DESeq2" and then the post was changed after my answer was added. …
Comment: fgsea fork
by
shepherl
3.8k
Not quite sure what you mean by clone or fork the package on latest version of R. Bioconductor runs all builds on the latest version of R.…
Answer: Doing comparison of RNA-seq data using EdgeR
by
Gordon Smyth
50k
It's pretty easy to do a two-group comparison using edgeR, but you seem to be stuck at the initial stage of reading data into R. If you exp…
Answer: Differing results from plotMDS and PCAtools
by
Gordon Smyth
50k
The reason why the two plots are different is that the first plot is a PCA plot while the second is a biplot. Quite different plots. The P…
Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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