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DBA
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DBA Error in DiffBind - How to format sampleSheet
DBA
R
DifferentialPeakCalling
2.3 years ago
opheevallee
• 0
0
votes
1
reply
1.3k
views
DiffBind dba error
DiffBind
dba
R
error
updated 4.6 years ago by
Rory Stark
★ 5.1k • written 4.8 years ago by
annika-helverson
• 0
3
votes
3
replies
4.0k
views
Error "if (is.na(peaks)) { : argument is of length zero " in DiffBind
diffbind
chipseq
peaks
dba
is.na
6.0 years ago • updated 5.9 years ago
maria.kondili
▴ 10
0
votes
0
replies
1.0k
views
How to call "DBA_CONDITION" for mutiple conditions and How to control GLM program
cancer
deseq2
edger
CONDITIONS
DBA
6.2 years ago
arcucamila
• 0
3
votes
7
replies
1.9k
views
dba.count with pre-defined regions
dba.count
dba
chipseq
diffbind
updated 6.3 years ago by
Rory Stark
★ 5.1k • written 6.3 years ago by
sylvia
▴ 10
0
votes
1
reply
1.2k
views
can't find function "dba" in DiffBind
DiffBind
dba
package installation
7.4 years ago
rebecca.spokony
• 0
1
vote
16
replies
3.5k
views
Error: could not find function "dba"
software error
diffbind
dba
7.4 years ago
mmarins
• 0
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Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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