Bioconductor DE analysis

Showing : DE analysis • reset

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1.3k

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NanoStringDiff NanoString nCounter DE analysis

updated 2.0 years ago by anastazie.d ▴ 20 • written 3.8 years ago by lim6432 ▴ 50

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1.3k

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RNAseq DESeq2 outlier counts DE analysis

updated 3.0 years ago by Kevin Blighe 3.8k • written 3.0 years ago by DcL-A • 0

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696

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DE analysis miR deseq2 mirplant

updated 5.6 years ago by Michael Love 40k • written 5.6 years ago by weissert • 0

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1.2k

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rnaseq de analysis gene filtering noiseq

updated 5.8 years ago by James W. MacDonald 63k • written 5.8 years ago by Mau ▴ 20

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1.9k

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edgeR DE analysis fold change cpm

updated 6.8 years ago by Ryan C. Thompson 7.8k • written 6.8 years ago by Sara ▴ 10

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1.9k

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edgeR RNAseq DE analysis gene filtering

6.8 years ago Mau ▴ 20

6 results • Page 1 of 1

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Answer: Can VST-transformed community composition data be expressed as relative abundanc by Michael Love 40k

The point of the VST is to make the data systematically homoskedastic (that is, not systematic trend of variance over mean, but not e.g. fo…

Comment: How to update a package at Bioconductor by ma79 • 0

thanks, just informed the original maintainer to send an email.

Comment: Error: biomaRt has encountered an unexpected server error. by Mike Smith ★ 6.0k

Unfortunately, the BioMart LDS functionality have been flaky for a while now e.g. https://support.bioconductor.org/p/9143401/ , https:/…

Comment: Use with_go along with other filters in getBM function by Mike Smith ★ 6.0k

Hi @rubbit0, I'm not sure I understand what you're trying to do. Do you have a long list of Ensembl Gene IDs and you're trying to select …

Comment: Adjusting for baseline when having longitudinal data, mixed model and no treat by Anna ▴ 20

Dear Gordon, these are my metadata. As you see some subject are missing for timepoint 1 Subject Timepoint 1 ID1 Baselin…

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Dispersion plot -Interpretation -DESeq2

Answer: Dispersion Estimates and MA plots

DESeq2: When to split multiple group samples for 'more' accurate sizefactors, dispersions etc.

WGCNA coupled with differential expression analysis: question about baseline module detection

WGCNA with paired samples

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