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DEA
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How does edgeR calculate fold change?
DifferentialExpression
DEA
FC
FoldChange
edgeR
2.6 years ago
zhxiaokang
▴ 20
0
votes
4
replies
1.7k
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Simple differential expression analysis for 2 groups
differential gene expression
agilent microarrays
microarray
DEA
Limma
5.7 years ago
christiangriffioen
• 0
2
votes
1
reply
777
views
combine two differential expression methods
edger
deseq2
dea
publish
updated 6.6 years ago by
Aaron Lun
★ 28k • written 6.6 years ago by
roser.navarro
• 0
3 results • Page
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Answer: List of Deprecated Packages for Bioc3.19
by
shepherl
3.8k
singleCellTK has been fixed and will remain in Bioconductor
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
Yes, I'm working only with genes from terpenoids pathway (14 genes), so I can't use enrichGO? Can you recommend a package or something like…
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
Your awnser at Cannabis orgDb solve my problems using enrichGO by far. I'm underdegree biotechnology student, and I learning bioinformatic…
Comment: Trying to use enrichGO
by
Guido Hooiveld
★ 3.9k
It is indeed better. Anyway, did you notice this part in the output from `str(ortologos_filtrados)`: `$Gene.ID : int 115709372 115716460 …
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
I'm new here, but its better now?
Votes
Comment: Trying to use enrichGO
Answer: Cannabis OrgDb
DESeq2: How to find out how well the model fits the data?
Comment: DESeq2 - dispersion estimation when there is none
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
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