Bioconductor DECIPHER

Showing : DECIPHER • reset

3

votes

5

replies

1.6k

views

DECIPHER

updated 10 months ago by Ling-Hsiu ▴ 10 • written 14 months ago by julieta.micorriza • 0

0

votes

2

replies

866

views

DECIPHER FASTA disambiguate

written 3.9 years ago by joannew • 0

0

votes

0

replies

99

views

DECIPHER LearnTaxa

8 days ago Eryn • 0

0

votes

3

replies

677

views

DECIPHER idtaxa

updated 9 months ago by Erik Wright ▴ 150 • written 9 months ago by Till ▴ 30

4 results • Page 1 of 1

Recent ...

Replies

Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240

They are reorder in the decreasing order.

Comment: significant difference of p-values with dream() after updating VariancePartition by Le • 0

Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…

Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs by sredemption • 0

Try library(enrichplot) dotplot(gsea_FS, showCategory=10, split=".sign") + facet_grid(.~.sign)

Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0

Thank you for your reply and I know there is another post similar to this you had mentioned this. How are the genes that I mentioned in the…

Answer: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240

The genes are automatically ordered within `fgsea`, there is no need to sort them manually.

Votes

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos

Using GRanges and IRanges to simply get all chromosome data

Awards • All