Showing : DECIPHER • reset
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How to use DECIPHER to design group-specific primers
Decipher
4.0 years ago hoonhuiyi • 0
5
votes
7
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1.6k
views
Is it possible to do an alignment to a chosen reference sequence in DECIPHER?
R decipher biostrings
updated 6.3 years ago by ▴ 150 • written 6.3 years ago by • 0
1
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6
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1.8k
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Issue with DECIPHER::IdTaxa
DECIPHER IdTaxa
3.6 years ago sebastian.mynott • 0
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5
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1.4k
views
DECIPHER maximum allowable size
DECIPHER Alignment alig
updated 2.9 years ago by ▴ 150 • written 3.0 years ago by ▴ 10
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5
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1.7k
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Program not properly installed/program not accessible by system
R decipher
updated 3.1 years ago by ▴ 150 • written 4.0 years ago by • 0
0
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5
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2.2k
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Do DECIPHER:IdTaxa / dada2::assignTaxonomy work with ambigious reference training set?
decipher dada2
updated 2.9 years ago by ▴ 10 • written 4.2 years ago by • 0
1
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5
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1.6k
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DECIPHER version bug using biocLite()
DECIPHER
7.9 years ago Vinicius Henrique da Silva ▴ 40
2
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5
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1.9k
views
Multiple Sequence Alignment using DNA sequence
msa decipher
6.9 years ago bbista91 ▴ 10
0
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5
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3.8k
views
Error in (function (classes, fdef, mtable)
software error DECIPHER
updated 4.0 years ago by 3.8k • written 4.0 years ago by • 0
2
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5
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1.6k
views
Colour a phylogenetic tree, based on column in DECIPHER?
r decipher biostrings
updated 6.3 years ago by ▴ 150 • written 6.3 years ago by • 0
3
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5
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1.6k
views
Error: 'IdClusters'
DECIPHER
updated 11 months ago by ▴ 10 • written 14 months ago by • 0
2
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4
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1.7k
views
How to get sequence homology percent from a multiple sequence alignment in DECIPHER?
decipher r protein alignment
6.0 years ago reubenmcgregor88 • 0
0
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4
replies
1.3k
views
help with large Rgraphviz output
graph DECIPHER graph DECIPHER
updated 17.9 years ago by ★ 7.4k • written 17.9 years ago by ▴ 890
0
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3
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2.7k
views
mt.teststat
multtest DECIPHER multtest DECIPHER
updated 8.3 years ago by ▴ 20 • written 21.1 years ago by ▴ 220
2
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3
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1.8k
views
Is it possible to import a multiple fasta alignemnt (.mfa) file into DECIPHER?
decipher DNA biostrings
updated 6.4 years ago by ▴ 150 • written 6.4 years ago by • 0
1
vote
3
replies
1.2k
views
Transform index to chromosome in DECIPHER package
decipher
updated 6.3 years ago by ▴ 150 • written 6.3 years ago by ▴ 40
0
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3
replies
1.7k
views
DECIPHER save alignement in outputs
msa decipher output prettyPrint
updated 3.6 years ago by ▴ 290 • written 3.6 years ago by • 0
0
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3
replies
683
views
DECIPHER IdTaxa: Speed up training?
DECIPHER idtaxa
updated 9 months ago by ▴ 150 • written 9 months ago by ▴ 30
0
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3
replies
1.2k
views
Issue::DesignPrimers DECIPHER
DECIPHER DesignPrimers
updated 2.6 years ago by • 0 • written 2.6 years ago by • 0
0
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3
replies
1.0k
views
Problem with multiple sequence alignment using AlignSeqs
R dada2 DECIPHER
updated 16 months ago by ▴ 150 • written 16 months ago by • 0
1
vote
2
replies
1.4k
views
Display BrowseSeqs output in R Notebook?
BrowseSeqs DECIPHER notebook rmarkdown
updated 4.6 years ago by ▴ 150 • written 4.6 years ago by • 0
0
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2
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1.0k
views
Is it possible to import many .tsr sequence file into R using bio strings for use in DECIPHER?
r biostrings decipher
6.3 years ago reubenmcgregor88 • 0
0
votes
2
replies
889
views
how to design probes using decipher
R decipher
4.0 years ago hoonhuiyi • 0
0
votes
2
replies
878
views
convert sequences disambiguated with DECIPHER back to FASTA
DECIPHER FASTA disambiguate
written 3.9 years ago by • 0
2
votes
2
replies
1.9k
views
How to combine sequences from different stringsets?
biostrings decipher
updated 6.2 years ago by ★ 6.5k • written 6.2 years ago by • 0
0
votes
2
replies
776
views
insufficient alignment
DECIPHER Alignment
3.5 years ago julius_vn • 0
0
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1
reply
1.6k
views
AlignSeqs error: protect(): protection stack overflow
multiplealignment decipher
6.6 years ago c.l.frankling • 0
0
votes
1
reply
716
views
PCR simulation with PNAs
PCR DECIPHER PNA
4.6 years ago marissaruthlee • 0
0
votes
1
reply
897
views
DECIPHER::AlignSeqs fails with a large guide tree
DECIPHER
updated 4.3 years ago by ▴ 150 • written 4.3 years ago by ▴ 10
0
votes
1
reply
955
views
Possible bug in ConsensusSequence
DECIPHER
updated 8.0 years ago by ▴ 10 • written 8.0 years ago by • 0
0
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1
reply
1.1k
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Agi4x44PreProcess: Replicated Genes and Custom Annotation Database
Annotation zebrafish probe DECIPHER Annotation zebrafish probe DECIPHER
updated 13.7 years ago by ★ 7.2k • written 13.7 years ago by ▴ 40
0
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1
reply
1.8k
views
boxplot error with expression set using oligo package and Human gene st 1.0 arrays
oligo DECIPHER oligo DECIPHER
updated 13.9 years ago by ★ 4.3k • written 13.9 years ago by ▴ 40
0
votes
1
reply
832
views
Defining groups in Decipher by sequence position in the database (FASTA)
DefiningGroups RStudio DECIPHER Specificprimers
updated 3.2 years ago by ▴ 150 • written 3.2 years ago by • 0
0
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1
reply
770
views
ORF finding in DECIPHER
ORF DECIPHER ORFhunteR
updated 2.9 years ago by ▴ 150 • written 2.9 years ago by • 0
0
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1
reply
1.2k
views
DECIPHER - AlignSeqs error is.leaf(dend) node stack overflow
decipher alignment
updated 6.5 years ago by ▴ 10 • written 6.5 years ago by • 0
0
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1
reply
674
views
OligoArrayAux fails to compile
DECIPHER
17 months ago fabian.roger08 ▴ 10
0
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0
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111
views
LearnTaxa with custom Silva
DECIPHER LearnTaxa
14 days ago Eryn • 0
0
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0
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636
views
Alignment larger than the maximum allowable size
DECIPHER
updated 4.8 years ago by 3.8k • written 4.8 years ago by • 0
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0
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1.5k
views
'Heat Map for Genes in Dataset' in the '(project name).global.plots.pdf' output of the R-GSEA code
Genetics Clustering DECIPHER Genetics Clustering DECIPHER
14.1 years ago Radek Blatny ▴ 60
0
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0
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368
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Updating 16S training set with LearnTaxa
DECIPHER
16 months ago Connor • 0
0
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0
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1.2k
views
Basic Question about gcrma & exporting to excel > (command not working)
Microarray affy gcrma oligo arrayQualityMetrics DECIPHER Microarray affy gcrma oligo
13.9 years ago Dick Beyer ★ 1.4k
0
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0
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1.7k
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Post-doc position in Paris
Sequencing Epigenetics Cancer Breast DECIPHER Sequencing Epigenetics Cancer Breast
14.8 years ago Joern Toedling ▴ 450
0
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0
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760
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DECIPHER Probe Design Questions
DECIPHER
3.4 years ago henry1995910343 • 0
0
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0
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1.5k
views
Job: Bioinformatics Postdoc Position at the IMB, Mainz
Genetics DECIPHER Genetics DECIPHER
10.1 years ago Kathi Zarnack ▴ 110
0
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0
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948
views
DECIPHER Package on dada2 -Implementing Silva_metaxa2 training set from qza file into a fastq.gz/.Rdata
DECIPHER dada2
3.1 years ago anrongloh • 0
45 results • Page 1 of 1
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Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by shuwangxinze1996 • 0
Hello, I used 48 cpus and 320G of memory to run this program. My bam files size are 7-9G, wonder how much CPU and memory is enough?
Comment: DESeq2 output used for PCA plot on R studio by Kevin Blighe ★ 3.9k
This comment helps.
Comment: DESeq2 output used for PCA plot on R studio by Kevin Blighe ★ 3.9k
I am not sure how your comment helps here?
Votes
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
Answer: How to retrieve gene ontology GO class from gene list?
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