Bioconductor DECIPHER

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DECIPHER

updated 10 months ago by Ling-Hsiu ▴ 10 • written 14 months ago by julieta.micorriza • 0

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DECIPHER FASTA disambiguate

written 3.9 years ago by joannew • 0

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DECIPHER LearnTaxa

5 days ago Eryn • 0

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DECIPHER idtaxa

updated 9 months ago by Erik Wright ▴ 150 • written 9 months ago by Till ▴ 30

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Comment: flowStats Search Error by tholmes • 0

Thank you so much!

Comment: what is the sampleFiles by James W. MacDonald 65k

I don't see any sampleFiles argument for any function in that package. Ideally you would at least tell us what function you are using.

Comment: Interaction Terms in DESeq2 - Shrinkage by Michael Love 41k

Yes, apeglm requires relevel and nbinomWaldTest to generate the coefficient estimate and its SE. Alternatively you can use ashr with a con…

Comment: A ComBat-seq issue: the covariates are confounded by schlumbohm • 0

Dear ATpoint, thank you for the comment. I did correct the question. For the group, I did accidentally share the input for all three batch…

Comment: Memory errors using read.bismark? by Peter Hickey ▴ 690

If you process serially (i.e. with `BPPARAM = SerialParam()`) then you might be okay. The final object will be on the order of 250 GB in-me…

Votes

Comment: Not fully paired differential gene expression analysis

Comment: [DiffBind] Obtaining normalization factors

Answer: ComplexHeatmap: add pch to rowAnnotation when the input is a data frame with var

Comment: Not fully paired differential gene expression analysis

Answer: GSVA error

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