Bioconductor DEGseq

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limma DEGseq

updated 7 weeks ago by James W. MacDonald 65k • written 8 weeks ago by mia • 0

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RNASeqData DEGseq

updated 8 months ago by ATpoint ★ 4.0k • written 8 months ago by sybyun419 • 0

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DEGseq RNASeqData limma

updated 10 months ago by Gordon Smyth 50k • written 10 months ago by Shaimaa Gamal • 0

3 results • Page 1 of 1

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Comment: How to retrieve detailed regression results from deseq2 by Weiqian ▴ 10

Hi Michael, thanks for the answer! I'll have a look : )

Comment: DESeq filtering specific to contrasts by Michael Love 41k

It will likely not filter it out, but really the per-dataset details would affect the results.

Comment: DESeq filtering specific to contrasts by Carlin95 • 0

Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…

Comment: FilterByExpr low counts with small sample size by Jonathan ▴ 10

Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0

Thank you very much for your reply! I will do so. Kind regards, Seyram

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A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

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