Bioconductor DEP

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DEP

updated 7 months ago by shepherl 4.1k • written 7 months ago by Namrata • 0

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limma Differentialenrichmentanalysis DEP

updated 9 months ago by Gordon Smyth 52k • written 9 months ago by Laura • 0

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DEP

updated 5 weeks ago by Anni • 0 • written 3.6 years ago by hele7 ▴ 20

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Comment: fail to use addPerROIQC in Rmd by shepherl 4.1k

Just covering all bases. You defined spe earlier in the R markdown that is not shown?

Comment: Open Sesame: in what genes are my differentially methylated probes!! by alyssa-daniel • 0

@zhouwanding I have a question regarding DML analysis. I understand the Est_ output is describing the difference in methylation between the…

Comment: DESeq2 dispersion estimates fitting drastically different based on explanatory v by Sam • 0

Here is the explanatory variables![enter image description here][1] uses if that helps address the problem as well [1]: /media/images/…

Comment: Merge Replicates vs Mixed Model by abadgerw • 0

Thanks, @gabrielhoffman My understanding is that both options would still be mixed models: Even with technical replicates (3 wells per d…

Comment: Differential Expression Genes as Independent Variables by Dario Strbenac ★ 1.5k

Also, the reason why gene abundance is the dependent variable and is iterated over is that there are far more genes than there are samples …

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