Bioconductor DEP

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LFQ DEPpackage run_app('LFQ') ShinyApps DEP

updated 9 months ago by Ram ▴ 190 • written 10 months ago by d.kozhevnikova ▴ 10

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DEP

updated 4 days ago by shepherl 3.8k • written 4 days ago by Namrata • 0

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Proteomics DEP limma

written 2.8 years ago by barrypraveen • 0

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limma Differentialenrichmentanalysis DEP

updated 6 weeks ago by Gordon Smyth 50k • written 7 weeks ago by Laura • 0

4 results • Page 1 of 1

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Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Michael Love 41k

I don't really have any additional suggestion here.

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0

Dear Michael, I tried all three ways (the orIginal, increasing the number of required samples,and subsetting (the countdata and metadata be…

Comment: DESeq2 - dispersion estimation when there is none by Michael Love 41k

The red line does assume that shape but the fact the black points show that pattern is discussed in the 2014 paper. > Some caution is warr…

Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by James W. MacDonald 65k

I don't really follow what you are saying. All you have to do is delete the NCBI.sqlite db and *re-run the script exactly as you did above.…

Comment: Methylation Analysis experiment design using Limma by hortense96 • 0

Thank you very much for your reply and your suggestion, as I'm having a bit of trouble finding information on how to manage this part of th…

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DESeq2: How to find out how well the model fits the data?

Comment: DESeq2 - dispersion estimation when there is none

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa

Answer: OrgDb for maize

Answer: DESeq2 - dispersion estimation when there is none

Awards • All

Scholar to Michael Love 41k