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DES
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With DESeq2 "Not full rank" Error with design
DESeq2
DEs
13 days ago • updated 11 days ago
feather-W
• 0
0
votes
1
reply
581
views
Matrix not full rank (time-series experiment with one group and covariates )
DESeq2
DES
updated 3.3 years ago by
Michael Love
41k • written 3.3 years ago by
heikki.sarin
▴ 10
0
votes
1
reply
479
views
Design structure
DESeq2
des
updated 16 months ago by
Michael Love
41k • written 16 months ago by
Devin
• 0
0
votes
1
reply
530
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Design Matrix Singularity Error
DES
DESIGN
updated 18 months ago by
Michael Love
41k • written 18 months ago by
mike
• 0
4 results • Page
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Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Answer: Merging featureCounts output for different species
by
Michael Love
41k
Bioconductor support site is for posting questions about software. Try biostars.
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Votes
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
Circumvent creating .ff files in the working directory when using genotype.Illumina() function
Answer: Problem with maplot {affy} method when using rma {affy} method output as its inp
Answer: Microarray Limma Model fitting and DEG
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