Bioconductor DES

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DESeq2 DEs

5 weeks ago feather-W • 0

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Des DESeq2

updated 12 days ago by hemantcnaik • 0 • written 12 days ago by Sahar • 0

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556

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DES DESIGN

updated 19 months ago by Michael Love 41k • written 19 months ago by mike • 0

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DESeq2 DES

updated 3.3 years ago by Michael Love 41k • written 3.3 years ago by heikki.sarin ▴ 10

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498

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DESeq2 des

updated 17 months ago by Michael Love 41k • written 17 months ago by Devin • 0

5 results • Page 1 of 1

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Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k

Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…

Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k

IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…

Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0

I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…

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C: null model and DEXSeqDataSet object in DEXSEQ

Answer: Interpret plot from DiffBind

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Supporter to JKim • 0