Showing : DESE • reset
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Error in DESeqDataSet(se, design = design, ignoreRank) : all variables in design formula must be columns in colData
DESE DESeq2
updated 23 months ago by ▴ 770 • written 23 months ago by • 0
2
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17
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1.7k
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lfcshrink error DESeq2
DESeq2 lfcshrink DESe
updated 11 months ago by 41k • written 11 months ago by • 0
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3
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1.4k
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ERROR: unable to find an inherited method for function ‘dispersions<-’ for signature ‘"DESeqDataSet",
DESeq2 dese
2.2 years ago aedavids ▴ 20
4
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4
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1.1k
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Adding cell population estimates as a covariate in DESeq2 differential gene expression analysis
DESeq2 Dese DifferentialRegulation differe
updated 4 weeks ago by • 0 • written 12 months ago by ▴ 10
2
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3
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971
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Single sided P-value for DESeq2 Likelihood Ratio Test
DESeq2 DESe
updated 3.1 years ago by 41k • written 3.1 years ago by • 0
3
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3
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915
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Merging two plated in R
dese DESeq2
updated 23 months ago by 65k • written 23 months ago by ▴ 10
0
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2
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915
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Handling NA's in Deseq2
Dese DESeq2
10 months ago Asger Mølgaard • 0
0
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2
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838
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DESeq2 ratio of ratios and p-value
DESeq2 dese
2.5 years ago wilfried.guiblet • 0
0
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5
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788
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DESeq2 analysis
DESe DESeq2
8 months ago Adèle • 0
0
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2
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747
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Effect of within-group variation on gene expression analysis
DESeq2
updated 3.4 years ago by 41k • written 3.4 years ago by • 0
0
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2
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610
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where the gene is overexpressed and down regulated while doing DESeq2 analysis
DESe DESeq2
updated 2.5 years ago by 41k • written 2.5 years ago by • 0
0
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2
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386
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Linear Model Fitting and Colinearity
dese DESeq2
4 months ago Hugo • 0
0
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2
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233
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DESeq2 Results in Different Pvalue & Log2FC using the same code and data
DESeq2 dese
updated 9 weeks ago by ★ 4.0k • written 9 weeks ago by • 0
0
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2
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231
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Cross-species analysis using DESeq2 - size factor computation
dese DESeq2
11 weeks ago pl23 • 0
0
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1
reply
146
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collapseReplicates dimension error
DESeq2 Dese
updated 24 days ago by 41k • written 27 days ago by • 0
15 results • Page 1 of 1
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Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question by Garrett • 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240
They are reorder in the decreasing order.
Comment: significant difference of p-values with dream() after updating VariancePartition by Le • 0
Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…
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Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos
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