Showing : DESe • reset
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collapseReplicates dimension error
DESeq2 Dese
updated 4 weeks ago by 41k • written 4 weeks ago by • 0
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DESeq2 Results in Different Pvalue & Log2FC using the same code and data
DESeq2 dese
updated 10 weeks ago by ★ 4.0k • written 10 weeks ago by • 0
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Cross-species analysis using DESeq2 - size factor computation
dese DESeq2
12 weeks ago • updated 11 weeks ago pl23 • 0
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Linear Model Fitting and Colinearity
dese DESeq2
4 months ago Hugo • 0
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5
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DESeq2 analysis
DESe DESeq2
9 months ago • updated 8 months ago Adèle • 0
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Handling NA's in Deseq2
Dese DESeq2
10 months ago Asger Mølgaard • 0
2
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17
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1.7k
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lfcshrink error DESeq2
DESeq2 lfcshrink DESe
updated 11 months ago by 41k • written 11 months ago by • 0
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Adding cell population estimates as a covariate in DESeq2 differential gene expression analysis
DESeq2 Dese DifferentialRegulation differe
updated 5 weeks ago by • 0 • written 12 months ago by ▴ 10
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3
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922
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Merging two plated in R
dese DESeq2
updated 23 months ago by 65k • written 23 months ago by ▴ 10
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Error in DESeqDataSet(se, design = design, ignoreRank) : all variables in design formula must be columns in colData
DESE DESeq2
updated 23 months ago by ▴ 780 • written 23 months ago by • 0
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ERROR: unable to find an inherited method for function ‘dispersions<-’ for signature ‘"DESeqDataSet",
DESeq2 dese
2.2 years ago aedavids ▴ 20
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DESeq2 ratio of ratios and p-value
DESeq2 dese
2.5 years ago wilfried.guiblet • 0
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617
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where the gene is overexpressed and down regulated while doing DESeq2 analysis
DESe DESeq2
updated 2.5 years ago by 41k • written 2.5 years ago by • 0
2
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3
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976
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Single sided P-value for DESeq2 Likelihood Ratio Test
DESeq2 DESe
updated 3.2 years ago by 41k • written 3.2 years ago by • 0
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2
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755
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Effect of within-group variation on gene expression analysis
DESeq2
updated 3.4 years ago by 41k • written 3.4 years ago by • 0
15 results • Page 1 of 1
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Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by shuwangxinze1996 • 0
Hello, I used 48 cpus and 320G of memory to run this program. My bam files size are 7-9G, wonder how much CPU and memory is enough?
Comment: DESeq2 output used for PCA plot on R studio by Kevin Blighe ★ 3.9k
This comment helps.
Comment: DESeq2 output used for PCA plot on R studio by Kevin Blighe ★ 3.9k
I am not sure how your comment helps here?
Votes
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
Answer: How to retrieve gene ontology GO class from gene list?
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