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Comment: DESEQ2 looking at main effects while controlling for a continuous variable
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James W. MacDonald
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The covariate is accounted for when you fit the model, so you don't need to do anything with it at the contrast step.
You don't need a con…
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Lennie
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Thank you so much for taking the time and for the detailed explanation!
I was wondering, in your numeric contrast of c(1, -1, 0,0,0), doe…
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If you use a factor effects model (with an intercept), then you will have a baseline group (the intercept), and all other coefficients exce…
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