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Comment: DiffBind custom normalization factor
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Abbie
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Hello!
Thanks so much for adding dba.normalize and all the documentation in the manual! I'm hoping I can ask a follow-up question here.
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All of the annotation packages provided by Bioconductor are simply repackaging of existing data from one or more sources. In this case, the…
Comment: Using TPM from tximport of Salmon output for singscore
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Thank you for the suggestions Michael. Would you say that after filtering out the low count genes, `rlog(counts, blind = T)` is doing the s…
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Michael Love
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For clustering generally we recommend `vst()` see the workflow for example.
For working with individual samples, I can see how a scaling/t…
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I'd recommend working with a local statistician or someone familiar with linear models in R. I have to reserve my time on the support site …
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